PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000255146
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 307aa    MW: 36035.7 Da    PI: 10.6378
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000255146genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.31.1e-24114157851
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     rqvtfskRr gi+KKA ELSvLCd eva+iifs+tgkl+++ss
  MDP0000255146 114 ARQVTFSKRRRGIFKKAGELSVLCDSEVAIIIFSQTGKLFDFSS 157
                    69****************************************96 PP
2K-box24.98.5e-102452991569
          K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                    +  +++  +L ke+e   +++R+++GedLe+L+l eLq+Le+ ++ sl ++ ++K
  MDP0000255146 245 QLEKKNKIRLSKELEDKSHKLRQMKGEDLEDLDLDELQKLEKLVKVSLGRVIQTK 299
                    555666678999999999*******************************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-3199158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.05399159IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-23101121IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-24101160IPR002100Transcription factor, MADS-box
PfamPF003199.8E-22114155IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-23121136IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-23136157IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.452244307IPR002487Transcription factor, K-box
PfamPF014863.1E-7245299IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAIAFITPTA SVTIDLRSMF LILFPPKNIY KEKRNEQRKD TTRFFHKWEI SFRNLSFPER  60
PAARTRCLSS VFFSFQNCWX SLLWKFLGQT KNFRPERPQR REKIQIKKID YLPARQVTFS  120
KRRRGIFKKA GELSVLCDSE VAIIIFSQTG KLFDFSSSRI FNGDGSCTKG LDRERLLLKM  180
RRGLPLLYLD CYVRKWWAIW YSPTEMGTVV RYGHVKISCT KDVIARYSSR TGRENSDQPT  240
LDQLQLEKKN KIRLSKELED KSHKLRQMKG EDLEDLDLDE LQKLEKLVKV SLGRVIQTKV  300
NTGAHGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-14101158360MEF2C
5f28_B5e-14101158360MEF2C
5f28_C5e-14101158360MEF2C
5f28_D5e-14101158360MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.146151e-135fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2613556e-72KC261355.1 Pyrus pyrifolia cultivar Suli dormancy-associated MADS-box transcription factor (MADS1) mRNA, complete cds.
GenBankKR3493076e-72KR349307.1 Pyrus pyrifolia cultivar mixue dormancy-associated MADS-box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315905.13e-61MADS-box protein JOINTLESS-like
TrEMBLA0A0D5CUL78e-60A0A0D5CUL7_MALDO; Dormancy-associated MADS-box transcription factor
STRINGXP_008341072.11e-46(Malus domestica)
STRINGXP_008353306.16e-46(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.16e-27AGAMOUS-like 24