PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000255415

Common Name

YABBY3

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

YABBY

Protein Properties

Length: 188aa MW: 21270.3 Da PI: 7.7539

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000255415	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.9	6.2e-67	6	161	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + ++eq+Cy+ CnfC+ +lavsvP +slf +vtvrCGhCt+l svn+a a q + ++ ++++ + +++n++ ++++ ++++++ MDP0000255415 6 DVATEQLCYIPCNFCSIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSPSWQDV--------QAQNYNYNSQNYRIDXGSSSKCNKKNATR 93 5689***************************************99887765555543........45566666666655544443333333332 PP YABBY 100 .klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++ +ee v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl MDP0000255415 94 dPTSDHXTEE----RGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 0223333333....469***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-71	8	161	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	106	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MTSCVDVATE QLCYIPCNFC SIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSPS 60 WQDVQAQNYN YNSQNYRIDX GSSSKCNKKN ATRDPTSDHX TEERGVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLEANNQAK LDNDPEKHLM 180 SRAALLNN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13276	0.0	bud\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052446	5e-56	BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA.
GenBank	BT133581	5e-56	BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001281031.1	1e-139	axial regulator YABBY 5
Swissprot	Q8GW46	8e-85	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D9ZJG6	1e-138	D9ZJG6_MALDO; YABBY domain class transcription factor
STRING	XP_008385486.1	1e-138	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-83	YABBY family protein

Link Out ? help Back to Top
Phytozome	MDP0000255415
Entrez Gene	103448029

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]