PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000256160
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 194aa    MW: 22025.1 Da    PI: 9.6156
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000256160genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-10139163226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    + + C +++rtGtCky ++C F+H+
  MDP0000256160 139 GKKDCLHYMRTGTCKYENNCLFNHP 163
                    6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-4137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-6139164IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-8139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4143162IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
IETIRVYPAS ALIGSAKKCM YACVNXFVYY AXMMIFPAEL TQKEVSKDKA KQREELAVKQ  60
DQTESKKVFK DNAKQRGELA EKQGQTKNKV FKDKAKQRGE LAEKQGQTRN KYCPGXXKXE  120
PSVAPALKLN FLGLPIRPGK KDCLHYMRTG TCKYENNCLF NHPDPTPAEE SHPQFAYESH  180
GIHSKTTEFI TPVL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.64671e-173bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959722.14e-99trichohyalin-like isoform X10
RefseqXP_028959741.11e-99trichohyalin-like isoform X29
TrEMBLA0A498JK695e-91A0A498JK69_MALDO; Uncharacterized protein
STRINGXP_008352151.15e-95(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-15C3H family protein