PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000256276

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 285aa MW: 31136.7 Da PI: 9.3223

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000256276	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.3e-06	163	186	6	29
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L+el+P+ MDP0000256276 163 SIAERVRRTRISDRIRKLQELVPN 186 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.81E-6	160	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-5	162	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MQRAAGGSSG GEVSRGGGGL GRFSSAPAAW LEALLEEDEE DPLKPTQCLT ELLADNTPCT 60 TVDPASYEAA DGYLSRQHSS PADFSGGGGS GGYFSGFGIP AHLDLVSSSS LSPNSSSSSA 120 NKRVREQHHF SSDSHVKVEE GGLEDSVSCR VRAKRGCATH PRSIAERVRR TRISDRIRKL 180 QELVPNMDKF PFFVFSVVRA RRFSTLFGSS SSAVQTYLKQ VLGRRKSLPS LRQIFRIRTT 240 SKLHQLSLKR HGCLFEECIN VEDETXVGRY NTFQVCVVST RKLSP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008361617.1	1e-135	transcription factor bHLH80-like
Swissprot	Q9C8P8	3e-44	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A498HW05	1e-134	A0A498HW05_MALDO; Uncharacterized protein
STRING	XP_008361617.1	1e-134	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9132	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	7e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000256276