PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000256645
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 374aa    MW: 42165.5 Da    PI: 5.9616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000256645genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++++G g+W++++++ g+ R++k+c++rw +yl
    MDP0000256645 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKHAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding45.61.6e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
    MDP0000256645  67 RGMFSQQEEDLILSLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.683965IPR017930Myb domain
SuperFamilySSF466896.24E-2912108IPR009057Homeodomain-like
SMARTSM007176.5E-131363IPR001005SANT/Myb domain
PfamPF002495.4E-151461IPR001005SANT/Myb domain
CDDcd001671.34E-111761No hitNo description
Gene3DG3DSA:1.10.10.603.2E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.38766116IPR017930Myb domain
SMARTSM007173.6E-1366114IPR001005SANT/Myb domain
PfamPF002491.4E-1367111IPR001005SANT/Myb domain
CDDcd001675.38E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKHAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLILS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPTTHKPLT EEELKEKKNI DCSDLKESLP MPELPTMPIT MASQGPTFLL NDSNYYDGNG  180
GVLNNPQASR AFDSLSYFEY QSGFESSSAY NSDLVATQYH HTNIRPYESS SNFGFTSMPS  240
LANSDHGSMS GTDFSDNSAS RLSSFFMNEV KESSSNSSNV SSYAAGYHMT SNNGNNTIEN  300
AAFSWETDNK LDSLFQFHVN GIKSEEMIKP TSSWQQQGQL VXHHAQNSVD FSSYPLTSLS  360
EDLTGENFDV FQNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008348427.20.0transcription factor MYB86-like
TrEMBLA0A498I6W70.0A0A498I6W7_MALDO; Uncharacterized protein
STRINGXP_008348427.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-76myb domain protein 55