PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000256806
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 432aa    MW: 48642.8 Da    PI: 6.4357
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000256806genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.45.1e-1891463128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkk....leleevikevdi..ykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 
                     Gf+F+Ptd+el++++L+  +++++     + +++i+e+++  +++eP+++ +     ++ +++++yfFs+ +k ++ g++  r + + g+W+   
  MDP0000256806   9 CGFHFKPTDQELIHHFLRDFLTNRQllllQPYNTIIQECNLfgNRSEPSEIWEayegGAQLTDQSLYFFSELKKLNPMGSHIDRkIGSGGTWNIGK 104
                    7************************8886666668****9833478*****742444334467789******************4455789*9554 PP

            NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + ++    + + +glk+t+ + +  + +  + +W+++ey+l
  MDP0000256806 105 AVATWVNGtdgSPSPIGLKRTFCYKN--EGSEDNGRWLLDEYSL 146
                    444444434444455********984..3333578*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-207171IPR003441NAC domain
PROSITE profilePS5100523.0897171IPR003441NAC domain
PfamPF023657.6E-1310146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDNHSLVLCG FHFKPTDQEL IHHFLRDFLT NRQLLLLQPY NTIIQECNLF GNRSEPSEIW  60
EAYEGGAQLT DQSLYFFSEL KKLNPMGSHI DRKIGSGGTW NIGKAVATWV NGTDGSPSPI  120
GLKRTFCYKN EGSEDNGRWL LDEYSLFASH RKNYRDSRYD FDYVLCRLRK KDGSPVNKRK  180
CSTSEDQATS SKKKKCDDEK ILKDDDHXGS KQIMNAINAV EEEGPQGTSC LTNDLVAFDH  240
DQINEFTVGY DVAAYVYDID AKVNEKMTIN VAKLEELEEL EELLGQEFQE APLPTAAGVV  300
VADGEQALNS SILIPLPRRK REQCVCKLHL ADKFSKGFKA CSSLPNCLWY SCTVSIYLIT  360
GSINLLLVCR VQFPINLLIL DDVPQHSTSX PPAKSLNLFL SKPALVIGGL ALHKRNRKAL  420
SLLRSEEMQS KN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177194KRKCSTSEDQATSSKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028956332.12e-90uncharacterized protein LOC114824097
STRINGXP_008369763.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15308210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-13NAC family protein