PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000258530

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 362aa MW: 41125.8 Da PI: 10.5027

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000258530	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	40.7	7.2e-13	164	198	95	128
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++l g+kk Lvfy g+ap+gekt+W+mheyrl MDP0000258530 164 LgTRNLWGIKKALVFYAGKAPRGEKTNWIMHEYRL 198 2345569**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	17.616	68	224	IPR003441	NAC domain
Pfam	PF02365	7.3E-7	81	198	IPR003441	NAC domain
SuperFamily	SSF101941	4.97E-17	163	224	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MADTXPTAVS KTPPKTSPHG LPKKRYRPRV PPFPSPSSYI FSSPPYVSSF KCRLACFAXR 60 ASEITTARXR ECKRHPLKCR PPIYSFHRGS GSTRRTRSCR YQFRSLPKSI STNTTPGSSQ 120 AWRCTGKRSG ISFRQGIGST RTVRGRTGRP EAATGRRPGP ISRLGTRNLW GIKKALVFYA 180 GKAPRGEKTN WIMHEYRLAD VDRSPRKKNS LRLDDWVLCR IYNKKGTVEN QQPQQQQEQQ 240 RTTSRNASSG SEFEDRKPDN LRCPPPPASV VPSRHVSDYV YFDNSDSVPK LHTDSSCSEQ 300 VVSPELACEV QSEPKWKEWE KALEMPYSYM DTTVENGFGA QFQSGNEMSP LQDIFMYLQK 360 PY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MADTXPTAVS KTPPKTSPHG LPKKRYRPRV PPFPSPSSYI FSSPPYVSSF KCRLACFAXR  60
ASEITTARXR ECKRHPLKCR PPIYSFHRGS GSTRRTRSCR YQFRSLPKSI STNTTPGSSQ  120
AWRCTGKRSG ISFRQGIGST RTVRGRTGRP EAATGRRPGP ISRLGTRNLW GIKKALVFYA  180
GKAPRGEKTN WIMHEYRLAD VDRSPRKKNS LRLDDWVLCR IYNKKGTVEN QQPQQQQEQQ  240
RTTSRNASSG SEFEDRKPDN LRCPPPPASV VPSRHVSDYV YFDNSDSVPK LHTDSSCSEQ  300
VVSPELACEV QSEPKWKEWE KALEMPYSYM DTTVENGFGA QFQSGNEMSP LQDIFMYLQK  360
PY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-18	171	229	113	173	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14475	0.0	bud\| cell culture\| fruit\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028950057.1	1e-121	NAC domain-containing protein 2
Swissprot	Q39013	4e-69	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	D9ZJ92	1e-119	D9ZJ92_MALDO; NAC domain class transcription factor
STRING	XP_008338660.1	1e-120	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-70	NAC family protein

Link Out ? help Back to Top
Phytozome	MDP0000258530

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]