PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000258562
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 160aa    MW: 17743.4 Da    PI: 9.0602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000258562genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.83.1e-143281255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+G+r +k +g+ vAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  MDP0000258562 32 QYRGIRMRK-WGKXVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 81
                   7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-253191No hitNo description
Gene3DG3DSA:3.30.730.103.3E-283190IPR001471AP2/ERF domain
PROSITE profilePS5103220.8373289IPR001471AP2/ERF domain
PfamPF008471.7E-73281IPR001471AP2/ERF domain
SMARTSM003804.7E-343295IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-193290IPR016177DNA-binding domain
PRINTSPR003671.4E-103344IPR001471AP2/ERF domain
PRINTSPR003671.4E-107191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEGDYCCSSS SSSSTSMSME KRKHPDHHQE KQYRGIRMRK WGKXVAEIRE PNKRSRIWLG  60
SYTTPVAAAR AYDTAVFYLR GPSARLNFPE LVFQDDGQQP HDMSAASIRK KATEVGAKVD  120
AAQTALHSSP TSPSKTASSR GGSQKPDLNE YPDPENSDES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-153192466ATERF1
3gcc_A1e-153192466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.154660.0fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5065730.0KM506573.1 Eriobotrya japonica transcription factor ERF7 (ERF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378018.21e-116ethylene-responsive transcription factor ERF011-like
RefseqXP_008378019.21e-116ethylene-responsive transcription factor ERF011-like
RefseqXP_028962700.11e-116ethylene-responsive transcription factor ERF011-like
SwissprotO221746e-50ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A498JA091e-115A0A498JA09_MALDO; Uncharacterized protein
STRINGXP_008378018.11e-116(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.19e-50cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]