PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000259062
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 823aa    MW: 91309.9 Da    PI: 8.2243
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000259062genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-182673313298
                    --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +  ++el+v+v+r
  MDP0000259062 267 PTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGXNGELRVGVRR 331
                    3458************************************************..4489999****98 PP
2Auxin_resp100.81.8e-33357436183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++k+svG Rfkm+fe+ed++err+sGt+vg++d++p +W +SkWrsLk
  MDP0000259062 357 ASHALATQTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGIRFKMRFEGEDAPERRFSGTIVGLEDISP-HWADSKWRSLK 436
                    689***************6..9***********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.3E-6251333IPR003340B3 DNA binding domain
SuperFamilySSF1019364.45E-25255360IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-25261346IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-16266331IPR003340B3 DNA binding domain
CDDcd100171.38E-13269331No hitNo description
PROSITE profilePS5086311.237270333IPR003340B3 DNA binding domain
PfamPF065075.6E-31357436IPR010525Auxin response factor
PfamPF023096.7E-7644722IPR033389AUX/IAA domain
SuperFamilySSF542776.38E-14679762No hitNo description
PROSITE profilePS5174526.102686767IPR000270PB1 domain
PfamPF023091.1E-5733768IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MTYKYQLTHA RVAXEAYAVM ALKHIXSTSD PGAALPECPT PSLSRKSIFL SPSPSWPRPA  60
SAILSMTKSS KPLAWTTSMR TRSSPSHSST VVGRHRKHLR GHLTYTTRVR VLEENRDAVR  120
CXDADEAAQE AADAVTKRRR VSAPLHPRRT PPFRYALLLS DNPPLRLLSN YGGDLYPELW  180
KACAGPLVDV PXVQERVLYF PQGHMEQLEA STPTNQELNQ GIPQFNLPSK ILCXVVNVSL  240
LAEQETDEVY AQITLIPDAN DMTQATPTQE LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW  300
STFVTSKRLS AGDSFVFLRG XNGELRVGVR RLARQQSSMP SSVISSQSMH VGVLATASHA  360
LATQTLFVVY YKPRTSQFII GLNKYLEAVN NKFSVGIRFK MRFEGEDAPE RRFSGTIVGL  420
EDISPHWADS KWRSLKVHWD ESASIPRPDK VSPWEIEPFV ASVPPSLPQP AVVKNKRPRP  480
PTEIPDAMSS TASAMWNSGL SQSHDKSPPS VSAEGKRSEN HVGWQHQQAD VISNNSVPRI  540
QTDVGWLSSQ AGGSPHMFQE TMEDSKSASA WPVFSGYSTP NSSKLKNDSM FDHVEKEKKT  600
ETATSCRIFG IDFTSHSTSS PAMEKVPLQP ISGSTGTPEG RVSNMLATES DQKSDLSKTS  660
KEGKPGQLQL SPKETQSKHS CSMSARSRTK VQMQGIAVGR AVDLTTLEGY DQLIDELEEM  720
FDIKGQIRPG NIWQIVFTDN EGDMMLMGDD PWSEFCDMVK RIFICSSQNM KKISAGCKLP  780
MSSQEVEGGP CYWLEGSAEI KHAPEYIDII TVGHCGKVSS VPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-12617545919355Auxin response factor 1
4ldw_A1e-12617545919355Auxin response factor 1
4ldw_B1e-12617545919355Auxin response factor 1
4ldx_A1e-12617545919355Auxin response factor 1
4ldx_B1e-12617545919355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136140KRRRV
2475479KRPRP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959562.10.0LOW QUALITY PROTEIN: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A498JR980.0A0A498JR98_MALDO; Auxin response factor
STRINGXP_009358638.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9