PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000259111

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 382aa MW: 43616.9 Da PI: 6.4501

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000259111	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.3	3.1e-26	73	154	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rr + ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k+++++ s +++y++++e MDP0000259111 73 WVQDETRSLIALRRGXDGLFNTSKSNKHLWEQISAKMRQKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 154 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.142	65	129	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.6E-4	65	134	IPR009057	Homeodomain-like
CDD	cd12203	2.16E-27	71	136	No hit	No description
Pfam	PF13837	2.4E-20	72	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MYLSENARPI DFYKEEAGRD MMMEVVVSNE DLPQSQSQSQ AHLHQPPPQQ MLMGDSSGED 60 HXVRAPKKRA ETWVQDETRS LIALRRGXDG LFNTSKSNKH LWEQISAKMR QKGFDRSPTM 120 CTDKWRNLLK EFKKAKHHDR GSGSAKMSYY KEIEEILKER SKNTQXKSPT PPKVDSFVXF 180 SDKGIEDASI SFAPVEASGR PALNLERRLD HDGHPLAITA ADAVTAGGVP PWNWRETPGN 240 GGEGQAYGGR VILVNWGDYT RRIGIDGTAD AIKDAIKSAF RLRTKRSFWL EDEDQIVRSL 300 DRDMPLGNYT LHLDEGVAIK VCLYDESDHI PVHTEEKLFY TEEDYREFLS RRGWSCLREF 360 DGYRNIENMD DLRPGAIYRG VS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MYLSENARPI DFYKEEAGRD MMMEVVVSNE DLPQSQSQSQ AHLHQPPPQQ MLMGDSSGED  60
HXVRAPKKRA ETWVQDETRS LIALRRGXDG LFNTSKSNKH LWEQISAKMR QKGFDRSPTM  120
CTDKWRNLLK EFKKAKHHDR GSGSAKMSYY KEIEEILKER SKNTQXKSPT PPKVDSFVXF  180
SDKGIEDASI SFAPVEASGR PALNLERRLD HDGHPLAITA ADAVTAGGVP PWNWRETPGN  240
GGEGQAYGGR VILVNWGDYT RRIGIDGTAD AIKDAIKSAF RLRTKRSFWL EDEDQIVRSL  300
DRDMPLGNYT LHLDEGVAIK VCLYDESDHI PVHTEEKLFY TEEDYREFLS RRGWSCLREF  360
DGYRNIENMD DLRPGAIYRG VS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-52	67	152	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13098	0.0	bud\| flower\| fruit\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009359290.1	0.0	PREDICTED: trihelix transcription factor GT-1 isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A498HL35	0.0	A0A498HL35_MALDO; Uncharacterized protein
STRING	XP_008340157.1	0.0	(Malus domestica)
STRING	XP_008368267.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000259111

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]