PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000259403
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 258aa    MW: 29081.1 Da    PI: 9.0576
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000259403genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS128.29.5e-407117233345
           GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                    +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++ +ei+n+++ceg +r+erhe++ +Wr+r+++aGF+++p
  MDP0000259403   7 ELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFXEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQAAP 102
                    69********************************************************************************************** PP

           GRAS 329 lsekaakqaklllrkvk 345
                    ++    +qak  l k+k
  MDP0000259403 103 IKM--LAQAKQWLGKIK 117
                    975..557777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.561128IPR005202Transcription factor GRAS
PfamPF035143.3E-377117IPR005202Transcription factor GRAS
Gene3DG3DSA:3.30.70.1411.4E-55120247No hitNo description
HamapMF_0045130.53120255IPR001564Nucleoside diphosphate kinase
SMARTSM005626.1E-74120253IPR001564Nucleoside diphosphate kinase
SuperFamilySSF549193.4E-51121248No hitNo description
PfamPF003342.0E-49122247IPR001564Nucleoside diphosphate kinase
PRINTSPR012431.6E-46123145IPR001564Nucleoside diphosphate kinase
CDDcd044138.44E-80123247No hitNo description
PRINTSPR012431.6E-46167186IPR001564Nucleoside diphosphate kinase
PRINTSPR012431.6E-46187204IPR001564Nucleoside diphosphate kinase
PRINTSPR012431.6E-46208224IPR001564Nucleoside diphosphate kinase
PRINTSPR012431.6E-46231250IPR001564Nucleoside diphosphate kinase
PROSITE patternPS004690231239IPR023005Nucleoside diphosphate kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006165Biological Processnucleoside diphosphate phosphorylation
GO:0006183Biological ProcessGTP biosynthetic process
GO:0006228Biological ProcessUTP biosynthetic process
GO:0006241Biological ProcessCTP biosynthetic process
GO:0004550Molecular Functionnucleoside diphosphate kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSADGHELSP KILVLVEQDS SHNGPFFLGR FMEALHYYSA IFDSLDAMLP KYDTRRAKME  60
QFYFXEEIKN IISCEGPARV ERHERVDQWR RRMSRAGFQA APIKMLAQAK QWLGKIKEQV  120
DETYIMVKPD GVQRGLVGEI ISRFEKKGFK LTGLKLFQCP QDLAEEHYKD LKGKSFFPKL  180
IEYIVSGPVV CMAWEGVGVV AAXRKLIGAT NPLQAEPGTI RGDLAVQTGR NVVHGSDSPE  240
NGKREIGRLA LLASFTLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1s57_A1e-811182473132Nucleoside diphosphate kinase II
1s57_B1e-811182473132Nucleoside diphosphate kinase II
1s57_C1e-811182473132Nucleoside diphosphate kinase II
1s57_D1e-811182473132Nucleoside diphosphate kinase II
1s57_E1e-811182473132Nucleoside diphosphate kinase II
1s57_F1e-811182473132Nucleoside diphosphate kinase II
1s59_A1e-811182473132Nucleoside diphosphate kinase II
1s59_B1e-811182473132Nucleoside diphosphate kinase II
1s59_C1e-811182473132Nucleoside diphosphate kinase II
1s59_D1e-811182473132Nucleoside diphosphate kinase II
1s59_E1e-811182473132Nucleoside diphosphate kinase II
1s59_F1e-811182473132Nucleoside diphosphate kinase II
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.67310.0bud| cell culture| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtMajor role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392850.29e-89nucleoside diphosphate kinase 2, chloroplastic
SwissprotQ852S51e-80NDK2_TOBAC; Nucleoside diphosphate kinase 2, chloroplastic
TrEMBLA0A498I2J77e-95A0A498I2J7_MALDO; Nucleoside diphosphate kinase
STRINGXP_009359482.13e-88(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-28scarecrow-like 3