PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000259495
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 253aa    MW: 28496.9 Da    PI: 8.0533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000259495genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-1476129155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    ++ +hn+ Er RR++iNs ++ Lr+llP + ++ +kKls   ++ ++v+Y+ +Lq
  MDP0000259495  76 KKLNHNASERDRRKKINSLYSSLRSLLPAD-QPLQKKLSIPNTVSRVVKYVPELQ 129
                    6789*************************6.467777**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.04975128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.09E-476133No hitNo description
Gene3DG3DSA:4.10.280.105.7E-1276132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1476149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-1276129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-981134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MLALSPPMFS TIGWPIDQDP TSHDYYKDHI TTTNDQTAES SSLRILPSGR PQSELDVSTP  60
STTIRGECSS VSPVAKKLNH NASERDRRKK INSLYSSLRS LLPADQPLQK KLSIPNTVSR  120
VVKYVPELQK QVEGLIRKRE ELLSRIXKQE SALHEEKNQI KSAARSSLSA VSACQLNDRE  180
VAIQISSLKT KNNLLSDILL NLEEEGLQIL NASSFESSGG RVFYNLQFQV ERTYRLECES  240
LSDKLMSFYG QEY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389282.20.0transcription factor ORG2-like
TrEMBLA0A498HZQ11e-171A0A498HZQ1_MALDO; Uncharacterized protein
STRINGXP_008389282.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-52bHLH family protein