PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000259556
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 605aa    MW: 68610.3 Da    PI: 8.5399
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000259556genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.65.1e-19111362128
            NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiy.kvePwdLpkkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 
                    p G+rFhPtd+elv  yL+ + ++gk+l +  +i e +++ ++ Pw   +++ +    +++++fF + ++   +g+r++r + + g+W+ t +dk 
  MDP0000259556  11 PLGCRFHPTDQELVASYLRVRaLAGKPLGI-PFIYEYNLFgQTPPWVVWENFGGnslLDQDLFFFYELRS---SGSRSKRqIEAGGTWSGTSSDKV 102
                    78****************988255566666.779999887256888886533332224567888888766...4778888455589*******998 PP

            NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +   +g+++g k+ + + ++ ++  ++ dW+++ey+l
  MDP0000259556 103 LGL-DGNQIGEKRHFKYTNKGSE--NNGDWLLEEYSL 136
                    888.999**********944333..478*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-214152IPR003441NAC domain
PROSITE profilePS5100526.4210154IPR003441NAC domain
PfamPF023652.2E-1411136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MGMPLGYWGA PLGCRFHPTD QELVASYLRV RALAGKPLGI PFIYEYNLFG QTPPWVVWEN  60
FGGNSLLDQD LFFFYELRSS GSRSKRQIEA GGTWSGTSSD KVLGLDGNQI GEKRHFKYTN  120
KGSENNGDWL LEEYSLLPSA VAGAKVVLSR LKRNPRSRCG NRMDSSVPTP EFNEKPPVKR  180
AGKQVLNEKP PVKRKRARTE ELNEKPSVKK EKKKWDRKQI LVRVWSPLVN YKTALECISN  240
IHGNVKMTDF SVHDYVPLMS DVYSDPICLG GEYGATTSDE EILLHAEEFL LGFDQWLGTV  300
EGVFLGFLLC LTDPLHASSF CSQRVYCVLP FMISANFNAL KAYNTILFCP TFLLSVYFYC  360
RKNGVFSFHV MLAVLLRFFV NVLLVFLVMR TIMMFLATAS MAFARLFSSP IVLRLLFMEP  420
HGTWPGNELL GLDQGYEFRS GSYGHVQQHF CNSVGGEGMR VVWLKVVFNK LWGVHRTTQE  480
EERKENDEER GPTMPCDNPK RGWGAKCSIN EEAPTVQQTQ VVFGSSPKFM VEVNNKCPMC  540
PIINVHLKCG SFPQALVNPR QLKVLAVDDC VINGGLPLAP LQTFSFNYSH PKYLMYPKIW  600
YFQCE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506180.10.0PREDICTED: NAC domain-containing protein 41-like
STRINGXP_009339913.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1307323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-12NAC domain containing protein 3