PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000259614
Common NameMYB1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 222aa    MW: 26321.1 Da    PI: 8.7916
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000259614genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.9e-154487146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg + ++E +l+++++++lG++ W++Iar+++ gRt++ +k++w++
    MDP0000259614 44 RGDFKEDEVDLIIRLHRLLGNR-WSLIARRLP-GRTANAVKNYWNT 87
                     78999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.099138IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-82650IPR009057Homeodomain-like
SuperFamilySSF466894.6E-182791IPR009057Homeodomain-like
PROSITE profilePS5129423.8253993IPR017930Myb domain
SMARTSM007175.6E-144391IPR001005SANT/Myb domain
PfamPF002491.8E-134487IPR001005SANT/Myb domain
CDDcd001673.62E-94789No hitNo description
Gene3DG3DSA:1.10.10.601.5E-185190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEGYNENLSV RKGAWTREED NLLRQCRKSC RQRWLNYLKP NIKRGDFKED EVDLIIRLHR  60
LLGNRWSLIA RRLPGRTANA VKNYWNTRLR IDSRMKTVKN KSQEMRKTNV IRPQPQKFNR  120
SSYYLSSKEP ILDHIQSAED LSTPPQTSSS TKNGNDWWET LLEGEDTFEX AAYPSIELEE  180
ELFTSFWFDD RLSPRSCANF PEGQSRSEFS FSTDLWNHSK EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1812907105B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.75130.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2795980.0AB279598.1 Malus x domestica MdMYBA mRNA for myb transcription factor, complete cds.
GenBankAB7440000.0AB744000.1 Malus domestica MYB1 mRNA for MYB transcription factor, complete cds, cultivar: Fuji.
GenBankAB7440010.0AB744001.1 Malus domestica MYB1 mRNA for MYB transcription factor, complete cds, cultivar: JPP35.
GenBankGU2704710.0GU270471.1 Malus x domestica cultivar Ralls MYB1 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963316.11e-158transcription factor MYB113-like isoform X1
RefseqXP_028963317.11e-158transcription factor MYB113-like isoform X1
SwissprotQ9FNV99e-38MY113_ARATH; Transcription factor MYB113
TrEMBLA0SQ371e-157A0SQ37_MALDO; MYB transcription factor
STRINGXP_008381347.11e-157(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-40myb domain protein 113
Publications ? help Back to Top
  1. Takos AM, et al.
    Light-induced expression of a MYB gene regulates anthocyanin biosynthesis in red apples.
    Plant Physiol., 2006. 142(3): p. 1216-32
    [PMID:17012405]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]