PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000259867
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 709aa    MW: 80691.7 Da    PI: 5.2981
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000259867genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.91.9e-24496585189
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                    +fY++YA++vGF +r+ + + s+ +++i +r + C+k+g r+ + ++  ++ rr++++t  gCka++ vk++k+gkw++t+++++H+H+l
  MDP0000259867 496 EFYEDYARRVGFIMRIGQCRXSHVEKRILSRXLSCNKQGGRSLKARDqVRSVRRPQPTTGEGCKAMMLVKLKKSGKWVITRVVKDHTHPL 585
                    6****************************************99998845567889*********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5022215.155136IPR002048EF-hand domain
Gene3DG3DSA:1.10.238.105.2E-27388IPR011992EF-hand domain pair
SuperFamilySSF474734.42E-413141IPR011992EF-hand domain pair
PfamPF134993.3E-11467IPR002048EF-hand domain
CDDcd000511.86E-15562No hitNo description
SMARTSM000547.8E-5533IPR002048EF-hand domain
PROSITE patternPS0001801426IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022213.1193772IPR002048EF-hand domain
SMARTSM000542.9E-44169IPR002048EF-hand domain
PROSITE patternPS0001805062IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022217.35974109IPR002048EF-hand domain
PfamPF134991.4E-1376142IPR002048EF-hand domain
SMARTSM000546.7E-778106IPR002048EF-hand domain
CDDcd000514.24E-1682142No hitNo description
PROSITE patternPS0001808799IPR018247EF-Hand 1, calcium-binding site
Gene3DG3DSA:1.10.238.101.1E-2189142IPR011992EF-hand domain pair
PROSITE profilePS5022214.458112147IPR002048EF-hand domain
SMARTSM000540.0018116144IPR002048EF-hand domain
PROSITE patternPS000180125137IPR018247EF-Hand 1, calcium-binding site
Gene3DG3DSA:3.30.110.601.4E-5250299IPR001890RNA-binding, CRM domain
SuperFamilySSF754718.89E-7250300IPR001890RNA-binding, CRM domain
PfamPF031011.9E-23496586IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MDKAELRRVF HMFDQNGDGR ITKKEMRDSL EKLGIYIPDK DLIQMIEKID VNGDGFVDMD  60
EFGALYQTIM DERDEEEDMR EAFNVFDQNG DGFITVDELR SVLSSLGLKQ GKTLEDCTIM  120
IKKVDVDGDG RVNFKEFKQM MKGGGSLGDV VCKMFDEKPA AFGDLVGTAW FPPEGRRWVY  180
SAPYVNTEHK AVEPLENSKD GGAGADGAGD GKVKRKKLKG KRAVVRWLKF FRYKKKKDYE  240
RMTAEEKILH KLRKVVVKTF SPEEVKEIAS ELARLTGGIV LGIHEEYTII MYRGKNYYQP  300
PTEIMSPRIT LSRKKALDKS KYKDGLRAET GTESTDNVDS GSSSKLKLEA SNKVKEMMDR  360
SKERSEDDLS TDVDISSDSE DLSDIFCTDS DKETEKKADR PLYLEEFEKF TIESDGEPED  420
FKDHLRQISR DAKKDKSLDE DAGLPNFDEV DRIFLRAASL LRKKTGAPET SVERDLNAVG  480
EPYVGMEFES EDAAKEFYED YARRVGFIMR IGQCRXSHVE KRILSRXLSC NKQGGRSLKA  540
RDQVRSVRRP QPTTGEGCKA MMLVKLKKSG KWVITRVVKD HTHPLIVSSG NSMEIWFDKG  600
SESVYGYMIA EVHYLQPLNL IFSQITLQDA KDMKIAELTM DLEREEQLCG QYRELLLALL  660
NNVEEETXHI ATKVRGVVNY VREFETQVEG IPENQMESSS RASSKSNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2n6a_A4e-30414612152human calmodulin/connexin-36 peptide hybrid
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214236RKKLKGKRAVVRWLKFFRYKKKK
2231237RYKKKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498IX100.0A0A498IX10_MALDO; Uncharacterized protein
STRINGXP_008382761.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-44FAR1 family protein