PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000261067
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 1078aa    MW: 119767 Da    PI: 7.567
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000261067genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-08692740348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
    MDP0000261067 692 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 740
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.869685744IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-11687746IPR009057Homeodomain-like
SuperFamilySSF466892.2E-15687752IPR009057Homeodomain-like
SMARTSM007171.2E-8689742IPR001005SANT/Myb domain
CDDcd116601.44E-18691741No hitNo description
PfamPF002497.2E-6692740IPR001005SANT/Myb domain
PROSITE profilePS5171046.3018561078IPR031167OBG-type guanine nucleotide-binding (G) domain
SuperFamilySSF525408.94E-508571065IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.1E-38857965IPR027417P-loop containing nucleoside triphosphate hydrolase
TIGRFAMsTIGR002312.3E-198571003IPR005225Small GTP-binding protein domain
PfamPF019263.1E-20857973IPR006073GTP binding domain
CDDcd018963.42E-1348571066No hitNo description
PRINTSPR003261.3E-28858878IPR006073GTP binding domain
PRINTSPR003261.3E-28879897IPR006073GTP binding domain
PRINTSPR003261.3E-28906921IPR006073GTP binding domain
PROSITE patternPS009050908921IPR006074GTP1/OBG, conserved site
PRINTSPR003261.3E-28923941IPR006073GTP binding domain
PfamPF168975.1E-369771068IPR031662GTP binding protein, second domain
Gene3DG3DSA:3.40.50.3004.1E-3810321066IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1078 aa     Download sequence    Send to blast
MHGRERIRSW SYNEDITFRN VKRFSNISRF VSCDLNLWCV EGCHGLCVEL TRTAVSANFL  60
ATHIDEWWRL QWSVASQAAA LWCSKLINIV FVSSCVTLTF LPMVGVEGND EGMCEESGVE  120
KSSSSLSSPK QIADPVVYKL VRVEGNGRLV PATDDEVMEV EDFLVDETVE LPVVPDAGNV  180
RCISNEESSS GKPQKENSEG LSHSENTEAD AKLSARLEYI EMLQKVKQEE RLHLAWGSPD  240
HSSSFMNVDI QCSDQHDKLP AIDEKLHSEI HLQDIGPPSS LSPDGSHINE SGRIGECSKQ  300
PPDGSACVIC TSSKPDLNTL KGEICLDNLS IRELHELFRA TFGRETTVKD KLWLKRRITM  360
GLTNSCDVST TTFTIVDNNL VKKGKDDSIQ NADGMLTEGS DGEAKNHGYE TSPTSHSSQV  420
ENPHTVSGKR LGNSSVELDC GSEDLHTDQR AAKRVRKPTK RYIEELSEVE SKDCSPKVIS  480
PVKNAGQGQT SLKSCRPLGN VPLSEKATVT RLDPLGNVTN VPSNERTYVT RLDSLGGSGV  540
QVPYVSRVRR SRPRKNIMAL MKFDMSVMGV TAKLVKEAFS VRSSLPESEH ADKVLKTRSA  600
SEQMKSQARS SSLNWIPLFL LHIELWAYVF EFDNAWFTAE PEKDKRRSVM GTIEPDKNMG  660
MKQTDSSEDN SDDGTAQIPT AKGGMRRKHH RAWTLVEVIK LVEGVSKCGT GRWSEIKRLS  720
FASYSYRTSV DLKDKWRNLL KASFAQTPPD DGINSRKHAS VPIPASILLK VRELAEMHAQ  780
LQRRHRRQLS HVAMGIIERI KEIEAEMART QKNKATEYHL GQLKAKIAKL RTQLLEPPKG  840
SSGGGDGFEV TKFGHGRVAL IGFPSVGKST LLTMLTGTHS EAASYEFTTL TCIPGIIHYN  900
DTKIQLLDLP GIIEGASEGK GRGRQVIAVA KSSDIVLMVL DASKSEGHRQ ILTKELEAVG  960
LRLNKKPPQI YFKKKKTGGI SFNSTLTLTH VDEKLCYQIL HEYKIHNAEL LFREDATVDD  1020
LIDVIEGNRK YMKCVYVYNK IDVIGIDDVD KLARQPNSVV ISCNLKASFT LIVSIKSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a9a_A2e-92797106212280RIBOSOME-INTERACTING GTPASE 1
4a9a_B2e-92797106212280RIBOSOME-INTERACTING GTPASE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1548554RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.227060.0bud| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351036.10.0uncharacterized protein LOC103414429 isoform X1
RefseqXP_017182129.10.0uncharacterized protein LOC103414429 isoform X1
TrEMBLA0A498J4Q30.0A0A498J4Q3_MALDO; Uncharacterized protein
STRINGXP_008351036.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-111TRF-like 6