PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000261432

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

YABBY

Protein Properties

Length: 149aa MW: 16430.2 Da PI: 7.1725

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000261432	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	75.8	1.4e-23	6	80	4	79
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkvee 79 + ++eq+Cy+ CnfC+ +lavsvP +slf +vtvrCG Ct+l svn+a a q l+ ++ + + + ++ + ++ MDP0000261432 6 DVATEQLCYIPCNFCSIVLAVSVPCSSLFDIVTVRCGRCTNLWSVNMAAAFQSLSWQDV-QAQNYNCNSQNYRIDS 80 5689***********************************************99999985.5555444445544433 PP
2	YABBY	44.9	4.5e-14	110	134	135	159
YABBY 135 eeiqrikasnPdishreafsaaakn 159 eeiqrika+nPdishreafs+aakn MDP0000261432 110 EEIQRIKANNPDISHREAFSTAAKN 134 9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.2E-26	8	88	IPR006780	YABBY protein
Pfam	PF04690	3.5E-12	110	134	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MTSCVDVATE QLCYIPCNFC SIVLAVSVPC SSLFDIVTVR CGRCTNLWSV NMAAAFQSLS 60 WQDVQAQNYN CNSQNYRIDS GSSSKCNKKN ATGDPTLDPC HGRKGCEPTE EIQRIKANNP 120 DISHREAFST AAKNDPEKHL MSRXALLNN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13276	1e-144	bud\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364015.1	2e-83	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	3e-46	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D9ZJG6	5e-80	D9ZJG6_MALDO; YABBY domain class transcription factor
STRING	XP_009364015.1	7e-83	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-48	YABBY family protein

Link Out ? help Back to Top
Phytozome	MDP0000261432

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]