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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MDP0000262878 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 915aa MW: 99566.4 Da PI: 4.8123 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 22.5 | 2.7e-07 | 701 | 730 | 2 | 31 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartm 31
+rW+ E+e l +v+++G+g+Wk+I +
MDP0000262878 701 KRWSLLEEETLRTGVQKYGKGNWKLILNSY 730
59************************8765 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 696 | 739 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.65E-8 | 697 | 741 | IPR009057 | Homeodomain-like |
| CDD | cd11660 | 1.13E-12 | 701 | 792 | No hit | No description |
| SuperFamily | SSF47699 | 6.07E-19 | 827 | 914 | IPR016140 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain |
| Gene3D | G3DSA:1.10.110.10 | 1.7E-18 | 827 | 914 | No hit | No description |
| CDD | cd01960 | 2.36E-30 | 827 | 914 | No hit | No description |
| PRINTS | PR00382 | 1.3E-13 | 828 | 844 | IPR000528 | Plant lipid transfer protein/Par allergen |
| PRINTS | PR00382 | 1.3E-13 | 848 | 862 | IPR000528 | Plant lipid transfer protein/Par allergen |
| PRINTS | PR00382 | 1.3E-13 | 869 | 884 | IPR000528 | Plant lipid transfer protein/Par allergen |
| PRINTS | PR00382 | 1.3E-13 | 886 | 903 | IPR000528 | Plant lipid transfer protein/Par allergen |
| PRINTS | PR00382 | 1.3E-13 | 904 | 915 | IPR000528 | Plant lipid transfer protein/Par allergen |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006869 | Biological Process | lipid transport | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 915 aa Download sequence Send to blast |
MDSDVDVSRW VIELLLRDRE KDCIAKRVLA VAPFSDQDYR LKKTVLLRTI ECEVYEASVS 60 EXILETLEMI EDLDIREGIS TMESMKAAYC AVATECTVKF LVGFMGKPSG KYLEAVDRIW 120 RGRVGVLERS GRSQLVSAEL RHRMDEVEAG VWDLRVSKKL SRMNTRNDAL RLLAVYVKAA 180 LALLGPPFIT WAIRLNVPKE VADLEADQIT VANEANVGCG SEVEGQKKKG AYAGDRTELE 240 VQMANGDNVG AGVSELENQM ANGDXAGAGV SELGSQMANR ANVGGDGGSE LDAQMANQAN 300 VGVRGLDLEA EXENXTTVGG RSDMEVQMEN GTDAGDGSEL GEQMVNGTNV GDGDQLEEQT 360 RKEANVTGDS ELEAQMMSGA SLVDRSEPES QTVNGTNEGV RSQRQAQTTN RSNVGSQSAL 420 EEQQLNAINX GEESELGPIL VAVPLKEVRA GSSPSLNGEL DLSIDHTTKD KENQSAVPRH 480 KHLAHRRTRG PIRIGDAEDS STEVSNRKFG SLSSPEVNKA QEALKSSISE LQEVVTDPLP 540 DALRVSETIR SGLAVRSANH VNGKDVGADN PSIEKGAGPV QSXNDNVGNL PSRHQNDPQS 600 SGIEKDVPNP PVDQGGTESV QTDAANLRNA SLNNQNNVAR SSLMERNSTA RTFEWEDSID 660 TSQEXTKKDA GRLHLPSPKR TAVSPLKKYG NIRLTKRRKV KRWSLLEEET LRTGVQKYGK 720 GNWKLILNSY RDIFEERTEV PMFRNIFIST FRKQVFLFIX NVSTSSVNVV SKTFGVTMSF 780 QVDLKDKWRN MEGNYGKDSG VTVSRAAFTV VLLSMLVTAP YTVNATVTCG QVVTLLTPCI 840 PFGVFGGDVP PDCCAGIKGL HDIQNTAEDR RTACSCIQQG AAMIPGLDYD RVNTLGDRCG 900 SPCPYTVYPS TNCSE |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2alg_A | 3e-21 | 827 | 914 | 2 | 89 | non-specific lipid transfer protein |
| 2alg_B | 3e-21 | 827 | 914 | 2 | 89 | non-specific lipid transfer protein |
| 2b5s_A | 3e-21 | 827 | 914 | 2 | 89 | Non-specific lipid transfer protein |
| 2b5s_B | 3e-21 | 827 | 914 | 2 | 89 | Non-specific lipid transfer protein |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009374383.1 | 0.0 | PREDICTED: uncharacterized protein LOC103963301 | ||||
| TrEMBL | A0A498ISV5 | 0.0 | A0A498ISV5_MALDO; Uncharacterized protein | ||||
| STRING | XP_008358924.1 | 0.0 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF2824 | 32 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G58340.2 | 6e-12 | MYB_related family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | MDP0000262878 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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