PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263392
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 227aa    MW: 24044.5 Da    PI: 9.1576
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263392genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-083155226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   kt+lC+ +     Ck+Gd+C+FaHg
  MDP0000263392 31 KTRLCNKYNTVEGCKFGDKCHFAHG 55
                   8*********99************8 PP
2zf-CCCH36.96.2e-12194219127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+lC +f + GtC +GdrC+FaHg+
  MDP0000263392 194 FKTKLCENFTK-GTCTFGDRCHFAHGQ 219
                    69*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-82760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-132760IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7092957IPR000571Zinc finger, CCCH-type
SMARTSM003560.00432956IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-53155IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.63E-1491171IPR004088K Homology domain, type 1
SMARTSM003228.3E-1099169IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.4E-1499169IPR004088K Homology domain, type 1
PROSITE profilePS5008413.565100164IPR004088K Homology domain, type 1
CDDcd001052.12E-13102164No hitNo description
PfamPF000131.9E-10102166IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.1E-16192223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-9192223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.206193220IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-8193219IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9194219IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTGSNPTHPP PPRNSAAPPS FPDGSSPPTV KTRLCNKYNT VEGCKFGDKC HFAHGXWELG  60
RPTAQSYEDP RXGGGFPGRM GGRMEPPPPA HGAVASFGAT ATAKISVDAS LAGAIIGKNG  120
VHSKQICRVT GAKLSIREHE TDHKLRNIEL EGTLDQIKDA SAMVRELIGN VSSGAGAHNM  180
RNPAISASSA ASNFKTKLCE NFTKGTCTFG DRCHFAHGQE ELRRSGM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138120.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008352575.21e-165zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R07e-80C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A498IT291e-166A0A498IT29_MALDO; Uncharacterized protein
STRINGXP_008338496.11e-166(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-57C3H family protein