PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263485
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 153aa    MW: 17667.2 Da    PI: 9.589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263485genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.9e-09123146124
                    --S---SGGGGTS--TTTTT-SS- CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFa 24 
                    ++ ++C +++rtG C yG+rC+++
  MDP0000263485 123 PGVPNCVYYMRTGLCGYGGRCQYN 146
                    5789******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.0844775IPR000571Zinc finger, CCCH-type
SMARTSM0035634774IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.469122150IPR000571Zinc finger, CCCH-type
SMARTSM003560.11122149IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6124146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
VHYVAQSCFV RRLDSSRKSE EVRIAKEVEA HELRIRKELE KQEIVRRKGV QPCTFYLQNG  60
QCKFGFXXKF DHRVQTMRYN LSASSLVDMP VVQYPVGFLL AXXAPSSSSL DLRPRSESYS  120
ERPGVPNCVY YMRTGLCGYG GRCQYNQPRD RSA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122112e-92fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017192654.14e-32zinc finger CCCH domain-containing protein 32-like isoform X3
RefseqXP_028956222.19e-32zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLA0A498JKW57e-44A0A498JKW5_MALDO; Uncharacterized protein
STRINGXP_008374312.11e-48(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-17C3H family protein