PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263830
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 644aa    MW: 74148.5 Da    PI: 5.9152
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263830genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.84.6e-105055425390
           FAR1  53 rtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    r+r+  r  Cka++ vk+ ++gkw+vt+++++H H+l 
  MDP0000263830 505 RPRPXRRECCKAMMLVKLXESGKWVVTRVVKDHAHPLI 542
                    688999******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129517.642236333IPR001890RNA-binding, CRM domain
SuperFamilySSF754717.59E-20237329IPR001890RNA-binding, CRM domain
SMARTSM011032.7E-19238322IPR001890RNA-binding, CRM domain
Gene3DG3DSA:3.30.110.601.0E-16238329IPR001890RNA-binding, CRM domain
PfamPF019852.1E-15238322IPR001890RNA-binding, CRM domain
PfamPF031015.3E-8505542IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAEFDELGFG ACTDSRGEDE FDGVAMADCS EKYTXQQDRS DNRRRTMKNH SKIQRERSEI  60
GSESEEDRER EEDCYFLPQL SPNAETGAAE RFPVTAPSQI PQPPQNIPTQ VFDEKPVWDV  120
VGIARFPLEC QKWVHSAPCV NTEHKAVEPL ENSKDGAGAE ATGDGKVKRK KLKGKRAVVR  180
WLKFFRYKKK KDYERMTAEE KILHKLRKAQ RKEERLVEAL KKIEPSEPSE TNHDPEILTP  240
EEHFYFLKMG LKCKNYVPVG RRGIYQGVIL NMHLHWKKHQ TLQVVVKTFS PEEVKEIASE  300
LARLTGGIVL GIHEEYTIIM YRGKNYSQPP TEIMSPRVTL SRKKALDKSK YKDGLRAVRK  360
YIPKLEQDLE LLRAQAKRKV DINTXYIEET QETDVDIASD SEDLSDIFDT DSEKEXEKKA  420
ERPLYLEEFE KFPVEGDGEP XDFEDHLRQI SRDAKKDKSL DEDAXLPNFD EVDRLDWTET  480
SAERDLNAVV EPHIGRNLSL KMLPRPRPXR RECCKAMMLV KLXESGKWVV TRVVKDHAHP  540
LIXSSGNSMD AKDMKIAELT MDLGREEQLC GQYHEPLLTL LNNVEXETEL IATKVRGVVN  600
HVREFETDVE XLPQNQMEAK VRRLPPNQTV TEVQGLPQSQ SGHN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168190RKKLKGKRAVVRWLKFFRYKKKK
2185191RYKKKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958238.10.0uncharacterized CRM domain-containing protein At3g25440, chloroplastic
RefseqXP_028958241.10.0uncharacterized CRM domain-containing protein At3g25440, chloroplastic
RefseqXP_028958242.10.0uncharacterized CRM domain-containing protein At3g25440, chloroplastic
SwissprotQ67XL41e-141Y3544_ARATH; Uncharacterized CRM domain-containing protein At3g25440, chloroplastic
TrEMBLA0A498JSC00.0A0A498JSC0_MALDO; Uncharacterized protein
STRINGXP_009349287.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.18e-19FAR1 family protein