PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000264051
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 259aa    MW: 29646.3 Da    PI: 8.9864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000264051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-162167248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + W +eEd++l ++v+ +G g+W+t++++ g++R +k+c++rw +yl
    MDP0000264051 21 NLWKPEEDLILRQYVETHGEGNWATVSKRSGLKRGGKSCRLRWKNYL 67
                     56*****************************99************97 PP
2Myb_DNA-binding52.31.3e-1673118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
    MDP0000264051  73 RGDMSQEEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 118
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9271567IPR017930Myb domain
SuperFamilySSF466892.35E-2819114IPR009057Homeodomain-like
SMARTSM007174.3E-141969IPR001005SANT/Myb domain
PfamPF002491.1E-142167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-212274IPR009057Homeodomain-like
CDDcd001674.48E-112367No hitNo description
PROSITE profilePS5129425.93168122IPR017930Myb domain
SMARTSM007172.4E-1672120IPR001005SANT/Myb domain
PfamPF002496.9E-1573118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2375122IPR009057Homeodomain-like
CDDcd001675.65E-1276118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTGNKRSSSV VKAGNAQPKK NLWKPEEDLI LRQYVETHGE GNWATVSKRS GLKRGGKSCR  60
LRWKNYLRPN IKRGDMSQEE QDLIIRMHKL LGNRWSLIAG RLPGRTDNEV KNYWNTHLNK  120
NISCCPAAGS KRKSTTITDY SNDGINITKK KNKXGTGKTS STXTTTTDDP MITSSTDRIP  180
KDTSSDHQHX HHKEPNIESM FTSTSTEESW FYDDMDFESP SELQYYQYYL PSFSSNFNAA  240
FAFDDEPFIG YMDSLLLFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22201227108B-MYB
1h8a_C3e-221212219128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008363004.20.0trichome differentiation protein GL1-like
TrEMBLA0A498KBJ70.0A0A498KBJ7_MALDO; Uncharacterized protein
STRINGXP_008363004.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.16e-65myb domain protein 82