PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000264179
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 180aa    MW: 19602.7 Da    PI: 7.1133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000264179genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.3e-07144169630
                    HHHHHHHHHHHHHHHHHHHCTSCC.C CS
            HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                    +++Er RR ri +++ +L+el+P+ +
  MDP0000264179 144 SIAERVRRTRISDRIRKLQELVPNmD 169
                    689********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.693138180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-6141170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-5143171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
LGRFSSAPAA WLEALLEEDE EDPLKPTQCL TELLADNTPC TTVDPASYEA ADGYLSRQHS  60
SPADFSGGGG SGGYFSGFGI PAHLDLVSSS SLSPNSSSSS ANKRVREQHH FSSDSHVKVE  120
EGGLEDSVSC RVRAKRGCAT HPRSIAERVR RTRISDRIRK LQELVPNMDK TYLKQVLGRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361617.11e-122transcription factor bHLH80-like
SwissprotQ9C8P82e-44BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A498HW051e-121A0A498HW05_MALDO; Uncharacterized protein
STRINGXP_008339199.11e-122(Malus domestica)
STRINGXP_008361617.11e-122(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-18bHLH family protein