PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000264383
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 1132aa    MW: 129930 Da    PI: 6.7777
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000264383genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.53e-2570155291
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    fY++YAk+vGF + k +s++s+ + e+++++f C ++g++++++++     ++r++ ++gCka+++vk++ +g+w+v++++++HnHel p
  MDP0000264383  70 FYKAYAKSVGFGTAKLSSRRSRASMEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPSGNWYVYSFVKDHNHELLP 155
                    ****************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-2370155IPR004330FAR1 DNA binding domain
PfamPF105512.6E-26268361IPR018289MULE transposase domain
PROSITE profilePS5096610.942548584IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-7548582IPR007527Zinc finger, SWIM-type
SMARTSM005759.5E-8559586IPR006564Zinc finger, PMZ-type
PfamPF057702.2E-1017791092IPR008656Inositol-tetrakisphosphate 1-kinase
SuperFamilySSF560591.22E-98631079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032957Biological Processinositol trisphosphate metabolic process
GO:0005622Cellular Componentintracellular
GO:0000287Molecular Functionmagnesium ion binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0047325Molecular Functioninositol tetrakisphosphate 1-kinase activity
GO:0052725Molecular Functioninositol-1,3,4-trisphosphate 6-kinase activity
GO:0052726Molecular Functioninositol-1,3,4-trisphosphate 5-kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1132 aa     Download sequence    Send to blast
MFVGPVKTFT PLPSPSTFEA ACGVDLNFPN TTTTTTFMDS SGPALALAPP SIAEPHDAME  60
FESHEAAYTF YKAYAKSVGF GTAKLSSRRS RASMEFIDAK FSCIRYGNKQ QSDDAINPRP  120
SPKIGCKASM HVKRRPSGNW YVYSFVKDHN HELLPDQAHF FRSHRNTDPL NNDVRIRRRK  180
SLAAESSLFS AYRNVDCLES YLRNQHDKGR SLALEAGDAQ LLLEYFMRMQ EDNPKFFYAV  240
DLNEEHGLRN AFWVDAKGME DYTNFNDVVF FDTTYFTHKY KIPLVLFIGV NHHIQPTLLG  300
CALIADETVY TFMWLMQTWF IAMGEQAPRV ILTDQNDAIK AAIPTVFPGT RHCFSLWNIM  360
EKMHRQLEFL RMWHDSFMEK FSKCIFKSWS EQQFEKRWWK LIDRFNLRDI EWMQSLFEDR  420
TRWAPTFMRD VSFAGLSPTS RSESLNSSFN KYIQGETTLR EFMERYRAIL EDRYEEEAKA  480
NFDAWHEMPE LRSPSPFEKQ MSLVYTHEVF KYFQVEVLGA AACHLKKENE GETSTTYSVK  540
DFEDNRNYTV EWNESKSDVY CSCHLFEYKG YLCRHAIVVL QMSGVFIIPP KYILQRWTNA  600
AMSRHDICER VDEVQSKVRR YNDLCRRAII VGEEGSLSQE SYDVALSAIK EAWKQCASLN  660
NXLENNAKPH DSAXHGVCGV DEENQCSTTS XANKTPRRAG SGKEVAARNG NNTSKKGKVD  720
SVELKRMNAM RDYIRGLILT IANTIQAKKQ IRSIRKEEEE DMAPSTKSLV SESEAAPVRR  780
YRIGYAFAPK KEQTFIQPSL LDHASRYGID FVPISIPDST TTAKTLIEQG PFDCIIHKIY  840
GPHWNQHLRE YSSQYPQTLI LDPPESIERL HNRVSMLDVL AAFELKPRQS GDKFQSKISV  900
PKQVLVDHYP EGEEETKLLA GLEFPVIAKP LLANGSTKSH EMCLIFSPKG LRSLLADTKS  960
PILLQQFVNH GGVVFKGYAI GEHVQCVKRR SLPDISKERV TALEEAVLPF SQISNSANDE  1020
HNLAHDPHEM PPLEFVEEAA KGIRVGLKLN FFNFDMIRDS KDPNSYFVID INYFPGYAKL  1080
PNYEHAFTDF LLNLLSTSSH PQKQKELQQL KEEEGATSFE SDVKQNRGHE EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2odt_X2e-25782110210324Inositol-tetrakisphosphate 1-kinase
2q7d_A2e-25782110220334Inositol-tetrakisphosphate 1-kinase
2q7d_B2e-25782110220334Inositol-tetrakisphosphate 1-kinase
2qb5_A2e-25782110221335Inositol-tetrakisphosphate 1-kinase
2qb5_B2e-25782110221335Inositol-tetrakisphosphate 1-kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.36320.0bud| cell culture| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357080.20.0protein FAR1-RELATED SEQUENCE 4-like isoform X1
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A251QQB10.0A0A251QQB1_PRUPE; Uncharacterized protein
STRINGXP_008357081.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]