PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000264681
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 220aa    MW: 25319.9 Da    PI: 10.2409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000264681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH247e-08165189226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    + + C +++rtGtCky ++C  +H+
  MDP0000264681 165 GKKDCLHYMRTGTCKYENNCLXNHP 189
                    6789****************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.446163191IPR000571Zinc finger, CCCH-type
SMARTSM003560.0091163190IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5165189IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
KKVSKDKAKQ REELVENQVQ TESKKNVSKD KAKRREXLAV KQDQTESKVF KDKPRQRGEL  60
AEKQGQTKNK VFKDNAKQRG ELAEKQGQTR NKKMSMDKAK QSEELTEKQD QTGSKIIVYP  120
KFWFLLQLLG FHALHPXYCP GQRKXEPSVA PALKLNFLGL PIRPGKKDCL HYMRTGTCKY  180
ENNCLXNHPD PTPAEESHPQ FAYESHGIHS KTTEFITPVL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.64672e-99bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959736.11e-105vicilin-like seed storage protein At2g18540 isoform X24
TrEMBLA0A498JK691e-130A0A498JK69_MALDO; Uncharacterized protein
STRINGXP_008352151.16e-93(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-14C3H family protein