PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000264809
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 233aa    MW: 26873 Da    PI: 8.7224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000264809genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.22e-0817511855
            AP2 18 eIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   e rdp+    +  r++lg+f taeeAa+a+ + ++k++g
  MDP0000264809 17 EFRDPR----KgVRVWLGTFNTAEEAARAYYREARKIRG 51
                   566763....349******************99999998 PP
2zf-CCCH21.44.4e-07161180625
                    -SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                    C+f+++tG C++G rC++ H
  MDP0000264809 161 CPFHLKTGACRFGQRCSRVH 180
                    ******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.751159IPR001471AP2/ERF domain
SMARTSM003802.8E-17765IPR001471AP2/ERF domain
CDDcd000185.18E-18960No hitNo description
SuperFamilySSF541714.18E-13960IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-19960IPR001471AP2/ERF domain
PROSITE profilePS5010311.732155183IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5160180IPR000571Zinc finger, CCCH-type
PRINTSPR018485.0E-13161180IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.0E-13180200IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0089701Cellular ComponentU2AF
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MCKKRSQLRG RGRTSTEFRD PRKGVRVWLG TFNTAEEAAR AYYREARKIR GKKAKVNFPN  60
EDDHLSAKTT RHENLAMEVK RKKQIEEEEE EEERTRTKAR EEEDELSRNQ QDSXRPTSNP  120
LPPQSEAFSD YKSSSMSAQQ LIESVAQQVP HFGTEQDKAH CPFHLKTGAC RFGQRCSRVH  180
FCPDKSSTLL IKNMYNGPGL AWEQDEGLEF SMWLPYIFVN AVLFMAAGVL LVH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.129178e-77bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324488e-74GU732448.1 Malus x domestica AP2 domain class transcription factor (AP2D24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959391.11e-65LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 5-like
STRINGXP_009362161.14e-69(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.13e-51C3H family protein