PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000265298
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 256aa    MW: 28563.8 Da    PI: 4.7223
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000265298genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP99.33.3e-31138203166
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTT CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrL 66 
                    +C+++gC++dls+ak y+rrh vCe hskap v+vsgl++rfC +Csrfh+lsefD++k+sCrr+L
  MDP0000265298 138 ICKADGCAVDLSDAKVYNRRHTVCELHSKAPLVIVSGLKRRFCHKCSRFHDLSEFDDTKQSCRRHL 203
                    5***************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-28134200IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.529136213IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.01E-29137205IPR004333Transcription factor, SBP-box
PfamPF031101.3E-24139203IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAKSEVRLNA LSVEGTRDLT ETLDPEANIM VGWQNVEDSW VAQSKTEHPS RTLGLDAMNM  60
QVGARSMEET SVSHVEEGLK RIQCEEVSEP DAPFRELKED VLKDEEDEEL DVQVEDHHDR  120
KKKGAESVTG ASGVRMAICK ADGCAVDLSD AKVYNRRHTV CELHSKAPLV IVSGLKRRFC  180
HKCSRFHDLS EFDDTKQSCR RHLPYIGTQV KDVSGDIDTV IGRIEWSGVV QSQNDQSEIK  240
DSYEVVEATP PAVGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-25129204376squamosa promoter binding protein-like 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959573.11e-168uncharacterized protein LOC103413440 isoform X1
RefseqXP_028959574.11e-168uncharacterized protein LOC103413440 isoform X2
TrEMBLA0A498JL741e-145A0A498JL74_MALDO; Uncharacterized protein
STRINGXP_008338363.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3832522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-28squamosa promoter binding protein-like 5