PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000265619
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Nin-like
Protein Properties Length: 1706aa    MW: 189398 Da    PI: 7.7791
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000265619genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.81e-2813391389252
         RWP-RK    2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52  
                     ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  MDP0000265619 1339 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKISKV 1389
                     89**********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089317.1282326IPR003439ABC transporter-like
Gene3DG3DSA:3.40.50.3004.3E-4696312IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525408.43E-4197313IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000052.2E-24102254IPR003439ABC transporter-like
SMARTSM003824.8E-12111326IPR003593AAA+ ATPase domain
PROSITE patternPS002110226240IPR017871ABC transporter, conserved site
PfamPF010612.0E-38426632IPR013525ABC-2 type transporter
PROSITE profilePS5151917.31413231409IPR003035RWP-RK domain
PfamPF020421.5E-2513411389IPR003035RWP-RK domain
SuperFamilySSF542771.37E-1916061692No hitNo description
Gene3DG3DSA:3.10.20.2402.3E-2116101691No hitNo description
PROSITE profilePS5174519.94416101692IPR000270PB1 domain
SMARTSM006664.9E-2116101692IPR000270PB1 domain
CDDcd064076.06E-3216111691No hitNo description
PfamPF005643.4E-1616131691IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0016887Molecular FunctionATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1706 aa     Download sequence    Send to blast
MELIDFNPRP RGLKPTLAEL LQWVRDAESP NNSPHDHVLQ LGYGCTSVPS SYPFVLSFTN  60
LTYSVKVRRK MTLVPSCFKR KRKTAEIKLG MDNNNTNTKV LLNRISGEAR EGEIMAVLGA  120
SGSGKSTLID ALANRISKES LKGSITLNGE ALDSRLLKVI SAYVMQDDLL FPMLTVEETL  180
MFSAEFRLPR SLSKSRKKAR VQALIDQLGL RNAAKTVIGD EGHRGVSGGE RRRVSIGIDI  240
IHDPIVLFLD EPTSGLDSTS AYMVVKVLQL IAQSGSIVVM SIHQPSYRIL SLLDRLIFLS  300
HGQTVYSDSR ANLPVFFGEF GHPIPETENR TEFALDLIRE LEETPGGTKS LVEFNKSWQI  360
TKNQQKQRAN QNNLMINSCC KPKLSLKDAI SASISRGKLV SGAPNDSNLS SSVPTFANPS  420
WIEMAVISKR SLTNSRRMPE LFGIRLGAVL ITGIILATMF WHLDSSPKGI KERLGFFAFT  480
MSTTFYTCAE AIPSFLQERY IFMRETAYNA YRRSSYVLAH SLISIPSLAF LSLTFAATTF  540
WAVGLAGGLH GFLFFFFTIF AAFWAGSSFV TFLSGIVTHV MLGYTVVVAI LAYFLLFSGF  600
FISRDKIPPY WLWFHYMSLV KYPYEGALQN EFDDPIKCFV RGTEMFDNSP LGAFPVAMKL  660
KLLKSMSTTL GVNITASTCV TTGADILKQQ GITDLNKWSC LWITIALGFF FRILFYLTLL  720
LGSKNKRRKT TNKLNSAVMS QSEIWRYHRQ RYLPSTSQTM GFNLNMDYHF LPKDKGTNHW  780
ASARAQVENL ASFDGGTSPA ATDQIAASLG VPSWPSVTYA PFYALNFVEP NGEQLPVTSG  840
AGTFNVGENF SCGDKIVFDQ MGTPQYGVST DSNEANDSAI KLNNSSFQHN NPMDMESYMI  900
YRPPGLSLNE KMLKALSMFK ETSGGGILAQ LWVPMKHGDQ YLLSTCEQPY LLDHILAGYR  960
EVSRMFTFST EEKQSSILGL PGRVFVSKIP EWTSNVIFYN KTEYLRVDYA ANHQVRGSIA  1020
LPIFDFDMEM SCCAVLELVS TKEKPNFDTE MEVVCGALQA VNLRTNAPLR LLPQCLSENQ  1080
RAALTEISDV LRVVCHAHLL PLAMTWIPCC YSEGNGDEIK RVCAKGGITN SNEKCILCIE  1140
ETACYVNDSR MQGFVRACAE HHLEEGEGIA GKALQSNHPF FINDVKVYDI CEYPLVHHAR  1200
KYGLNAAVAI RLRSTYTADD DYILEFFLPV NVKGSTEQQL LLNNLSGTMQ KICKSLRTAS  1260
DAELVGLEGT NTRFQKGLSP NVPQRHSRTT LSDSEMKSAK NVTFNVFNRK NGAIKRDNPP  1320
GKAPSGSRRQ VEKKRTTTEK NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR  1380
WPSRKISKVN RSLEKIQTVL DSVQGVDGGL KYDPTTGGFV ATGSIIQEVD APKNILFPEK  1440
NLYVENSEPV TQDLVSVSSL SINNGGSLTV KLEKDGSCVP TSHENEVKNQ SIPLMPSKPI  1500
AIDFGSCDPT NRGTKGSYLA KEVNKWGYTQ NSDCHFVSQS SGFLVATDEM DMGVHGNDGI  1560
VEYNQHSSSS LTDSSNDFGS IMQGHSSSSQ SFEEQKHPQV ETTTGENGSK IIVKATYIED  1620
TIRFKFEPSL GCLQLYEEVA KRLKLQSGTF QLRYLDDEEE WVMLVCDADL QECLEILDDI  1680
GTRCVKFLVR DVAFGMDSSG SSNFLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5nj3_A2e-685572445662ATP-binding cassette sub-family G member 2
5nj3_B2e-685572445662ATP-binding cassette sub-family G member 2
5njg_A2e-685572445662ATP-binding cassette sub-family G member 2
5njg_B2e-685572445662ATP-binding cassette sub-family G member 2
6eti_A2e-685572436653ATP-binding cassette sub-family G member 2
6eti_B2e-685572436653ATP-binding cassette sub-family G member 2
6feq_A2e-685572436653ATP-binding cassette sub-family G member 2
6feq_B2e-685572436653ATP-binding cassette sub-family G member 2
6ffc_A2e-685572445662ATP-binding cassette sub-family G member 2
6ffc_B2e-685572445662ATP-binding cassette sub-family G member 2
6hij_A2e-685572436653ATP-binding cassette sub-family G member 2
6hij_B2e-685572436653ATP-binding cassette sub-family G member 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16782RRKMTLVPSCFKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.74970.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340892.10.0PREDICTED: protein NLP9-like isoform X2
TrEMBLA0A498K4H30.0A0A498K4H3_MALDO; Uncharacterized protein
STRINGXP_008369825.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34643465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein