PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000265820
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 598aa    MW: 64683.3 Da    PI: 7.1896
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000265820genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP49.66.7e-1658135471
        E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     +Lr ++++   +++  e+ g++tl++va+e++se             +++n rRR+Y ++ VLeal++++  +k+ei+wkg
  MDP0000265820  58 GGLREFSSR---VCNILESkGTTTLSKVADEIISEfsgndsetakcskEFENVRRRVYTVFHVLEALDIVTT-AKKEIKWKG 135
                    59*******...99998888****************************99999******************9.*******98 PP
2zf-Dof123.95.4e-39311371262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  MDP0000265820 311 PEQALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 371
                    5799******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.9E-1555135IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-2456139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.9E-1359135IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.12E-1259136IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.64E-28141244IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.15E-30145257No hitNo description
PfamPF087811.3E-26146259IPR014889Transcription factor DP, C-terminal
SMARTSM011383.9E-31150291IPR014889Transcription factor DP, C-terminal
ProDomPD0074783.0E-30310369IPR003851Zinc finger, Dof-type
PfamPF027012.6E-32313369IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.544315369IPR003851Zinc finger, Dof-type
PROSITE patternPS013610317353IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MDDNYSGDSS SGFSQKXSSA ASSVSASVMN NAAASESARS SVEINAPKKK RASAIMAGGL  60
REFSSRVCNI LESKGTTTLS KVADEIISEF SGNDSETAKC SKEFENVRRR VYTVFHVLEA  120
LDIVTTAKKE IKWKGRPXDR SIMNLEGMNE ECVKLVNTIG RKTAYLKELE EQIADLEDLM  180
LHNKQLLKNG NTLPEGFSLP FILVQTSSHA SVEVEISEDM RVVFFDFNST PFSLHDDATI  240
VKLLQRHQRP ERTNASQSEF VAGCAVQVHX SVGATELVLV LEACVAERVA QARSGQAPWQ  300
IEPAWPTSPL PEQALKCPRC ESTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGALRNVPV  360
GGGCRRNKRS KGTSSSASKS PASSSDQPTG SASSSGHANL GLNNNSAAGS ADNDNMMMSP  420
QIPPLRFMSS FPTDMALNFG MMNNNNSSNY GIGDLSGFHQ MGSGLGASGG SLFNFQQQTP  480
SFPFMAGLDP TSAGLMFENS GVELTGYNQV RPRAPSAGMS IPQMASVKTE LESQQQQQQN  540
QELNLSRQLL GMNNNSGNDQ FWGNGGRGGG GASTTTAWTD LSGFNSTSTT SNNINNPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-16591411194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1564570GGRGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302370.0leaf
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-56Transcription factor DP