PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000266172
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Nin-like
Protein Properties Length: 937aa    MW: 105780 Da    PI: 6.6666
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000266172genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.73.6e-26175225252
         RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                    +k +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk++sl
  MDP0000266172 175 SKMLSRETVSQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLNSL 225
                    57899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.973157245IPR003035RWP-RK domain
PfamPF020421.4E-21178225IPR003035RWP-RK domain
PROSITE profilePS513759.613426460IPR002885Pentatricopeptide repeat
PfamPF015350.0078429458IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-5430461IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.7461495IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.4E-7493666IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.69496530IPR002885Pentatricopeptide repeat
PfamPF015353.3E-4501526IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.8E-5501527IPR002885Pentatricopeptide repeat
PfamPF130412.8E-9527576IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.2E-5529557IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.864531557IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.138564598IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.572599629IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-4602632IPR002885Pentatricopeptide repeat
PfamPF130418.5E-12629676IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.014630664IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.1E-7632665IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.144665700IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.5E-5668702IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.235701731IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.4E-7731786IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.481733763IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.213767801IPR002885Pentatricopeptide repeat
PfamPF144321.6E-33803927IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MTSHSLMGWL AKYDVVKDLG EDPFFFPNQP TFSTAHDFRG YAALDWQFDL PIVQDHSFLD  60
PLPLESCADI DPIYSSLDIP PIRTVLEDDG IFFANETVLL GVNSSNLCAG LTEVNHNHHQ  120
QYQQQQQQPL LPTCENEENG ITDENESREE RNKVISKRPH SYKRHRSSSS SLSSSKMLSR  180
ETVSQYFYMP ITQAAKELNV GLTLLKKRCR ELGIRRWPHR KLNSLQTLIR NIQELGKEGE  240
ESSEKLRNAI TLLERERKLL EEVPDMQLED NTKRLRQACF KANYKKRKIM GMNVMGQSLS  300
SFSCSNIQYP TSSMDADDED EEIKSLLLLC KQEHESEKMT ALPVATKAQT SYQKLLQTSS  360
STGLLSLIKS CTTKSHLLQI HAHTLRTSLV LDPTISFQFL SVVVALSPLT SITYSRQFFD  420
QIEKPTAFHY NKMIRAYSKS DSPAEGFYLY RDLRRRGLCA DAMASSFVIK SCIRVSSLVG  480
GIQVHARILR DGHRSDSLLL TTLMDLYSNC RKYDEACQVF DEMPKRDTVA WNVLISCCLH  540
NNRTRDALGL FDIMQSEIHR CEPDDVTCLL VLQACASLNA LEFGERVHKY IEDHGYGGAS  600
NLCNSLVSMY SRCGSLDKAY GVFKGMRDKN VVSWSAMISG LAVNGYGREA IEAFEEMQKM  660
GVLPDDQTFT GVLCACSHCG LVDEGMMFFD LMSKEFGVVP NVHHYGCMVD LLGRAGQLDP  720
AYQLITSMDI KPDPTIWRTL LGACRIHGND SLAERVVGHL IELKAQEAGD YVLLMNIYSS  780
AGNWEKLTEV RKFMKEKAIQ TTPGCSTIEL KGVAHEFVVD DVSHLRKDEI YKMLDEINSQ  840
LKIAGYVADV TSELHNLGAE DKGHALSHHS EKLAIAFGVL STPPGTPIRV XKNLRICVDC  900
HNFAMALSGV YNREVIIRDR TRFHHFREGH CSCNGYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D3e-563667972332PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374551.20.0LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g47530
SwissprotQ9SN850.0PP267_ARATH; Pentatricopeptide repeat-containing protein At3g47530
TrEMBLA0A498JKV80.0A0A498JKV8_MALDO; Uncharacterized protein
STRINGXP_008374551.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-37RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]