PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000266267
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 998aa    MW: 113186 Da    PI: 6.224
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000266267genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.12e-0769075858128
            NAM  58 wyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++fF + ++++ +++r++r + + g+W++t +dk +   +g  +g k  + + k+ ++  ++  W+++ey+l
  MDP0000266267 690 LFFFYELRSRSDSDSRSKRqIEAGGTWSETSSDKVLGL-DGIPIGDKGHFRYNKKGSK--NNGGWLLEEYSL 758
                    68888888888889999995566899******998888.9************954333..478*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF014854.9E-871126IPR002867IBR domain
SuperFamilySSF578506.0E-1680128No hitNo description
SuperFamilySSF1019412.22E-14669773IPR003441NAC domain
PfamPF023653.5E-5678758IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 998 aa     Download sequence    Send to blast
MIGGFFSFQL LMCLCGRTKW CPYPGCEYAV NFVGDIENYD VSSSAPMDFA GIVRRKLIVD  60
CSTVEKWILK NSAESENMNW ILANSKPCPK CKRPIEKXQG CMHMTCTPPC KFEFCWLCLG  120
SWAEHGERTG GLYACNRYEA AKQEGAMEKL SDIQREPESQ LKFITDAWQQ IVECRRVLKW  180
TYAYGYYLPE REQAKRQFFE YLQGEAESAL ERLHQCAEKE LLXFLSAEGP SKEFVDFHTK  240
LAGLTGVTKN YFQNLVXALE KGLCDVDSQA ACXVNXLKKR RKQQSKRWKG KXMYSTYIWT  300
CDQYRTTIPR LPHVPSPLVS IXASCVPESV GEXNLTQAKN KCTTDDGFYG TKTMMICSXY  360
FRISFSNVCV WTRFLNPYAV KLFRIAFIVI VKSXRQRAER XRHVIXPAFK RSNSQTKAHR  420
FRLFVLCFVK KLEMGGQDLR PTVSSLKRPR FPDADSDSDA AVTVLGDTVK RQRTHDSDDG  480
LLAVEDSIRE LDDLLHHEGS SSSTTEAYDC WEDDLLGSLI DEFEVLPDSA VAASAADEAA  540
VVPRLTTHLR HHDHEIEEGP RTTDERELDD EEDLITEFFN HIGGEDDEDP NQDHVHQATE  600
PDHTTLLIII IPFPPSQIII LPVVVGNIRR PRASNTRNRF LFSCSCLGTK TTIQETSTIC  660
SPRRASEIGF QVGYYGMPLG FRFHPTDQDL FFFYELRSRS DSDSRSKRQI EAGGTWSETS  720
SDKVLGLDGI PIGDKGHFRY NKKGSKNNGG WLLEEYSLLP NVVAGPKVVL SRLKRNPRSR  780
CGNKMNSSSP THDFNEKPPI KRARKEVSKE KPLIKRKTAR KEPGSQKHSN VNVITNTPAV  840
VPFVGTESNM ITDTRYQDQE CITNINGNAK PTDFSDQDSV ILMSDVPSYP ICLDGDATNH  900
DQGCISYING NVMPIRTHIS DHEYVPLMSD VPSSPVFLGG EEYPLDGEAV RGDIKEWLTT  960
LEGKLPQEWP QIDEFSQPLD GFNYWTDCLW MSDSVNDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kbl_A5e-2315221271515E3 ubiquitin-protein ligase ARIH1
4kbl_B5e-2315221271515E3 ubiquitin-protein ligase ARIH1
4kc9_A5e-2315221271515E3 ubiquitin-protein ligase ARIH1
5tte_B5e-2315221270514E3 ubiquitin-protein ligase ARIH1
5udh_A4e-2315221182426E3 ubiquitin-protein ligase ARIH1
5udh_B4e-2315221182426E3 ubiquitin-protein ligase ARIH1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277281KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.238302e-99fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-