PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000266908

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 1180aa MW: 132240 Da PI: 6.2614

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000266908	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.2	1.4e-52	299	434	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++++ePwdLpk +k++++ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s MDP0000266908 299 LPLGFRFRPTDEELINHYLRLKINGHDSEV-QVIPEIDVCRWEPWDLPKlsVIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKS 393 699**********************999.99***********5458889999********************************** PP NAM 95 k.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +vg+kktLvfy+grapkge+t+W+mheyr+ MDP0000266908 394 RqckfatnSNGQVGMKKTLVFYRGRAPKGERTSWIMHEYRA 434 988888877778*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-60	290	457	IPR003441	NAC domain
PROSITE profile	PS51005	57.55	299	457	IPR003441	NAC domain
Pfam	PF02365	9.7E-27	300	433	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1180 aa Download sequence Send to blast
MWFNLNKKKS FTRHNCWDIV KHTPKYKVLP SGPQVELNKT PLQKPTTEES PLKASLETQE 60 TPRPISVTPN DPFLLSTRRR PQSSLLYIRH SNHLVVFSAA WKLIVVSEDS KSPLMQIAAQ 120 MVRKVVACIC SSKAEIYIIF PKLAGQICIV RLHGILASFP ESRQGIRRGG SDYVKRLSRI 180 IGVLGIGTAL RLALEFLHEW SLRRAVQRVD ASHTNVPLGY HPAFRRRADT WRLVSLPLKQ 240 RCQRTRSSTT HARSTAPSQN PEASGQLSPP IRSLGFEKLG KLRKISGGRY MAELSMESLP 300 LGFRFRPTDE ELINHYLRLK INGHDSEVQV IPEIDVCRWE PWDLPKLSVI KSDDQEWFFF 360 CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQCKFAT NSNGQVGMKK TLVFYRGRAP 420 KGERTSWIMH EYRATQKELD GTAPSQGAFV LCRLFHKPEE KADEPKHDEV EQTGLSPTTT 480 KSSPDESSDI VQETATSEMQ GEKQSEGIMR WLTDKSDKVT PDAFCQLPVD SFMASDMEDH 540 GAVETGIQGH LTMEENPAFY ESLGGLDDSK DFSPLHSQIN AELEHYVGSP FTSDFGNYDN 600 VLHFQDGTCE RDVPLKELFD EFSNSHYGSS CEESTSQKNL VVGNETYLSG HACTTLPGNS 660 CFNGAWGNTD AKIAQNDLQR RASGLYNEQF GSEDLQNTSF GYWQAKAQAS FDDRKPRMGN 720 MTDSYLSQCS FAEQFPVSSV NDVSNSLHGS TGWKNLDNHS GDDVGGTGIK TRARHPQLQP 780 NIDNFVDQGS AARRLHLLVD RSVWSITNGN ESDENYSTEE DEVQSIIAET REDIQQSPTS 840 DEQEEEHAIF SNKEEWSSTN NSINHGFDPD GRSGIMIRTR QPQQRSNSDS SVTQDTAHRR 900 IGLQMNISYG SIADSNVRET DYGGEDEVES ANTEAREAIQ QSLASDEHEK EHAEINDKED 960 LATMKNSVNY DSNVVGRSGI KMKAPEPQQP LSSGDSATQA PASRRIRLQM STSPRSVVDS 1020 NVRDTTPAEE DNVQSTIYEV RMVNEANISI VYTYVRCSHQ ILSEQYCPLQ VKEATEKISN 1080 FDEQEAESRL LKSDMGRKIT DGSPTELVDE KRAAEEAPIT LRLRTGRDGA SPSSHMGLSV 1140 SSKELPKHHG LSPTFVILVG IPLAVTLFIA FSGIWMTFRS

Sequence ? help Back to Top

Protein Sequence Length: 1180 aa Download sequence Send to blast

MWFNLNKKKS FTRHNCWDIV KHTPKYKVLP SGPQVELNKT PLQKPTTEES PLKASLETQE  60
TPRPISVTPN DPFLLSTRRR PQSSLLYIRH SNHLVVFSAA WKLIVVSEDS KSPLMQIAAQ  120
MVRKVVACIC SSKAEIYIIF PKLAGQICIV RLHGILASFP ESRQGIRRGG SDYVKRLSRI  180
IGVLGIGTAL RLALEFLHEW SLRRAVQRVD ASHTNVPLGY HPAFRRRADT WRLVSLPLKQ  240
RCQRTRSSTT HARSTAPSQN PEASGQLSPP IRSLGFEKLG KLRKISGGRY MAELSMESLP  300
LGFRFRPTDE ELINHYLRLK INGHDSEVQV IPEIDVCRWE PWDLPKLSVI KSDDQEWFFF  360
CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQCKFAT NSNGQVGMKK TLVFYRGRAP  420
KGERTSWIMH EYRATQKELD GTAPSQGAFV LCRLFHKPEE KADEPKHDEV EQTGLSPTTT  480
KSSPDESSDI VQETATSEMQ GEKQSEGIMR WLTDKSDKVT PDAFCQLPVD SFMASDMEDH  540
GAVETGIQGH LTMEENPAFY ESLGGLDDSK DFSPLHSQIN AELEHYVGSP FTSDFGNYDN  600
VLHFQDGTCE RDVPLKELFD EFSNSHYGSS CEESTSQKNL VVGNETYLSG HACTTLPGNS  660
CFNGAWGNTD AKIAQNDLQR RASGLYNEQF GSEDLQNTSF GYWQAKAQAS FDDRKPRMGN  720
MTDSYLSQCS FAEQFPVSSV NDVSNSLHGS TGWKNLDNHS GDDVGGTGIK TRARHPQLQP  780
NIDNFVDQGS AARRLHLLVD RSVWSITNGN ESDENYSTEE DEVQSIIAET REDIQQSPTS  840
DEQEEEHAIF SNKEEWSSTN NSINHGFDPD GRSGIMIRTR QPQQRSNSDS SVTQDTAHRR  900
IGLQMNISYG SIADSNVRET DYGGEDEVES ANTEAREAIQ QSLASDEHEK EHAEINDKED  960
LATMKNSVNY DSNVVGRSGI KMKAPEPQQP LSSGDSATQA PASRRIRLQM STSPRSVVDS  1020
NVRDTTPAEE DNVQSTIYEV RMVNEANISI VYTYVRCSHQ ILSEQYCPLQ VKEATEKISN  1080
FDEQEAESRL LKSDMGRKIT DGSPTELVDE KRAAEEAPIT LRLRTGRDGA SPSSHMGLSV  1140
SSKELPKHHG LSPTFVILVG IPLAVTLFIA FSGIWMTFRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	294	457	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	294	457	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	294	457	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	294	457	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	294	457	15	168	NAC domain-containing protein 19
3swm_B	2e-45	294	457	15	168	NAC domain-containing protein 19
3swm_C	2e-45	294	457	15	168	NAC domain-containing protein 19
3swm_D	2e-45	294	457	15	168	NAC domain-containing protein 19
3swp_A	2e-45	294	457	15	168	NAC domain-containing protein 19
3swp_B	2e-45	294	457	15	168	NAC domain-containing protein 19
3swp_C	2e-45	294	457	15	168	NAC domain-containing protein 19
3swp_D	2e-45	294	457	15	168	NAC domain-containing protein 19
4dul_A	2e-45	294	457	12	165	NAC domain-containing protein 19
4dul_B	2e-45	294	457	12	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13260	0.0	bud\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008360722.1	0.0	NAC domain-containing protein 14-like
TrEMBL	A0A498I4X5	0.0	A0A498I4X5_MALDO; Uncharacterized protein
STRING	XP_008360722.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13625	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	1e-127	NAC 014

Link Out ? help Back to Top
Phytozome	MDP0000266908