PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000267681

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 389aa MW: 43778.6 Da PI: 4.6629

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000267681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.6	9e-18	8	144	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdi..ykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 p GfrF+Pt +elv ++L + +e+ + + ++ i+ ++i +k+eP+++ + +++ ++ +yfFs+ ++ +++g++ r + + g+W g MDP0000267681 8 PFGFRFKPTHQELVGHFLYNVLENIPlvPPHNTLIHGCNIfgNKSEPSEIWEayggtQLADDQPALYFFSELKRLNPKGTNIDRkMGRGGTWT--G 101 89********************99864454569944588*7435554444455588***************66679997..4 PP NAM 88 kdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127 k+ +v ++ + +++g k+t+ + ++ + + +W+++ey+ MDP0000267681 102 KSVTVRVEgivdgRPTDIGQKRTFRYENE--GSEDHKRWLLDEYS 144 44444443334447778******9843..3335789****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-20	6	170	IPR003441	NAC domain
PROSITE profile	PS51005	21.415	7	170	IPR003441	NAC domain
Pfam	PF02365	3.7E-13	8	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MENNSLVPFG FRFKPTHQEL VGHFLYNVLE NIPLVPPHNT LIHGCNIFGN KSEPSEIWEA 60 YGGTQLADDQ PALYFFSELK RLNPKGTNID RKMGRGGTWT GKSVTVRVEG IVDGRPTDIG 120 QKRTFRYENE GSEDHKRWLL DEYSHLAGPR NNKSNFSYDF NVALCRLRKK EGSRINKRKC 180 STSSLSKDQL PNSKKQRGTN KKMKKEDDQV VSKGSSSQNT NVINLAEEEA PHGSSCLSSE 240 IVVVSEINKF TDADDVVYDH DLLDETLTVD ELLPVPEASR IVSGEAVAEQ ALNPLMLEEF 300 TPETQEPPLP AASVVAAEGA VEQKAWDPSL LDEYWLAETQ QELFPTTTGM FPYLEXACNP 360 STFENVVDQL LFDINHWNNS FMDDQFMPP

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MENNSLVPFG FRFKPTHQEL VGHFLYNVLE NIPLVPPHNT LIHGCNIFGN KSEPSEIWEA  60
YGGTQLADDQ PALYFFSELK RLNPKGTNID RKMGRGGTWT GKSVTVRVEG IVDGRPTDIG  120
QKRTFRYENE GSEDHKRWLL DEYSHLAGPR NNKSNFSYDF NVALCRLRKK EGSRINKRKC  180
STSSLSKDQL PNSKKQRGTN KKMKKEDDQV VSKGSSSQNT NVINLAEEEA PHGSSCLSSE  240
IVVVSEINKF TDADDVVYDH DLLDETLTVD ELLPVPEASR IVSGEAVAEQ ALNPLMLEEF  300
TPETQEPPLP AASVVAAEGA VEQKAWDPSL LDEYWLAETQ QELFPTTTGM FPYLEXACNP  360
STFENVVDQL LFDINHWNNS FMDDQFMPP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028956332.1	0.0	uncharacterized protein LOC114824097
TrEMBL	A0A498KEC1	0.0	A0A498KEC1_MALDO; Uncharacterized protein
STRING	XP_009358388.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15308	2	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.2	1e-08	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	MDP0000267681