PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000267885
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 770aa    MW: 84360.2 Da    PI: 6.6513
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000267885genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.6e-19243343199
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++l
  MDP0000267885 243 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPIRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PGGRL 336
                    99**************************555556677***************9989999999***9.********************987.89999 PP

                    EEEEE-S CS
             B3  93 vvkvfrk 99 
                    v++++++
  MDP0000267885 337 VIGFRKA 343
                    9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-29239344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-21240343IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-24241342No hitNo description
PROSITE profilePS5086311.18243344IPR003340B3 DNA binding domain
PfamPF023628.6E-17243343IPR003340B3 DNA binding domain
SMARTSM010192.4E-23243344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
XVXKLSFTPX PLLLSLTIQN DDVLNGFGGL KISNSGDQQS TVPQNGALSD TANEGKLLQL  60
CQVMEANESN LSSQSQRGDI NVSPVQSKQE EVTYPKGEVG PGFSSITRPS IGSLTFAKPD  120
NGRIMIEVKD MNNPSSEPSL SMTLGGPSAT PNFAQPFTGG ILEGRDKSKM PSSFQQGQKI  180
RPILPRPLRP PSPVHHVRVA RPPSEGRGKS QLLPRYWPRI TDQELQKLAG EYPYLNSTIV  240
PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQSEGLPI RIQDVKGNEW TFQFRFWPNN  300
NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI DPGGRLVIGF RKASRSLDMQ DPQTSFLPNG  360
TPGETSCPSV VENLVTGSGQ SSIYQTNTGS KDPYLNALSG HLHLAXGDTS LHNCENHSHL  420
TSEDLLQRPV SNSDKKRARN IGPKSKRLLL HREDVLELRL TWEEAQDLLR PPPSVKPSIV  480
TIEDHEFEEY DEPPVFGKRS XFIAESECSC SAPEEVSQKE LDNLLRPSID LKKRRIVVNH  540
NEAQEXEPSG LDALASASAA ILGDSVDYSG EQSLGATTRH PRHRPGCTCI VCIQPPSGKG  600
KHKPTCTCNV CMTVKRRFKT LMMNKRKRKS EREAENAQRD NNDHKDESEM NGTSTEIELH  660
RNHSSENGGS SEKRIEADVA ESSCAGQIDL NCEPKHNYVQ VSGLNLLRLA DAVARQPVNN  720
GTRESFLTNK TCEPQAGLGS SLLAQETAET DRLMCNEGSL SSVAALDFGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-692183502131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614628KRRFKTLMMNKRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955399.10.0B3 domain-containing transcription repressor VAL2-like
TrEMBLA0A498K7150.0A0A498K715_MALDO; Uncharacterized protein
STRINGXP_008363434.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-150HSI2-like 1