PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000267984
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 476aa    MW: 53855.3 Da    PI: 6.9274
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000267984genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.91.5e-1381251128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 
                    +p GfrFhPtd+elv+ yL+ +  + k   + +++e++++ ++ Pw   +++ +  +       +   +  ++r++r + + g+W+ t +dk +  
  MDP0000267984   8 MPLGFRFHPTDQELVSSYLRDRXLSGKPLGNPFVHEFNLFgQTPPWVVWEQFGG--N-------SLLDQDXDSRSKRqIEAGGTWSXTSSDKVLGL 94 
                    699*****************9977666555477****98725677877533322..2.......2222334567777455689*******998888 PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g  +  k  + + ++   + ++  W+++ey+l
  MDP0000267984  95 -DGIPIXDKGHFRYNNK--GSNNNGXWLLEEYSL 125
                    .99**********9843..333578*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-174140IPR003441NAC domain
PROSITE profilePS5100520.8578143IPR003441NAC domain
PfamPF023651.4E-109125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEVGYYGMPL GFRFHPTDQE LVSSYLRDRX LSGKPLGNPF VHEFNLFGQT PPWVVWEQFG  60
GNSLLDQDXD SRSKRQIEAG GTWSXTSSDK VLGLDGIPIX DKGHFRYNNK GSNNNGXWLL  120
EEYSLLPNVV AGPKVVLSRL KRNXRSRCGN KMNSSSPTHD FNEKPPIKRA RKEVSXEKPL  180
IKRKRARKEP GSQKHSNVNV ITNTPAVVPF VGTESNMITD TRYQXQECIT NINGNAKPTD  240
FSDQDNHEYV PLMSDVPSSP VFLGGEEYXL DGEAVRGDIK EXLTTLEGVY LGLLLCRTDP  300
LPAFHFAAPQ FVNVLIVLLT IRTIIMFLAT VFMDFLWNVL REYTMMVNIA LIGCDFSFLF  360
DIIDLQIYVQ SRRIYCKEGQ CTYLVLFRPS IVYYLQASMK WGRVLKLPHF EEFFKVLIVV  420
LQFVRRLPCC TAGSDREAAL IGEFDLLPDP AAAAAASVAD EIETVLRTTD EQKKSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028954569.10.0NAC domain-containing protein 41-like
TrEMBLA0A498K3850.0A0A498K385_MALDO; Uncharacterized protein
STRINGXP_008345289.11e-173(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12591634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-08NAC domain containing protein 32