PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000268258
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family E2F/DP
Protein Properties Length: 537aa    MW: 61062 Da    PI: 8.9132
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000268258genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.61.6e-26158223171
        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    r ++sL+llt+kf+kl+ ++++++++ln  a+ L   +v  ++RRiYDi+NVLe++nl+ek++kn+irwkg
  MDP0000268258 158 RFDNSLGLLTKKFIKLIYEAKDRTLDLNRTAEVL---EV--QKRRIYDITNVLEGINLVEKTSKNHIRWKG 223
                    6799******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-26157224IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-32158223IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.3E-17158221IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.3E-24160223IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.42E-32234347No hitNo description
SuperFamilySSF1440748.37E-20236346No hitNo description
PfamPF164211.3E-21239344IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
METEDPNRLL RPSQFQFQLL HSHSQTQSHM SYXYSPLPPS QCLRPQLFPA LAPSXGSDRX  60
RLSGDASASL ATVDARSALA KLSLRPKQEI DNDTQIGGQE AAAGPSKVMK GILPLPQSCS  120
GAKHNGKLKV PKHTKVGTQR STADFCNGLG PAQAIGCRFD NSLGLLTKKF IKLIYEAKDR  180
TLDLNRTAEV LEVQKRRIYD ITNVLEGINL VEKTSKNHIR WKGYDGPTPC ELDDHVSRLK  240
DEVESLXEEE CRLDDAIXLL SRRYFXREKQ ELLRALEQDE KYLFFTEEDI SSLHCFQNQT  300
LIAIKAPQAS YIEVVDPDED ISFQQRQFRM IVKSTIGPID VYLLSKYQCQ LESIXLKKAK  360
LAGSSSCNRS DYCNAEDGGM PMMIIGLDQN LMLALQIYGV SNFLPLFCPK SFRINRRGLH  420
LPPLLVKTNQ IWIRCXHVGL RGITKDFLYW NLQRIRXGPK AKTSFKTVLR RVAQRWAMNI  480
DRSVNGIRXL IVPDDMRDIP YSLLVLPYKG VVRTFYCFSI IYSYCWKVLI MCGEDAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-20158227776PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.23441e-121leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357153.20.0transcription factor E2FC
TrEMBLA0A498JBD50.0A0A498JBD5_MALDO; Uncharacterized protein
STRINGXP_008357153.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.22e-82E2F/DP family protein