PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000268317
Common NameMADS
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 140aa    MW: 16305.4 Da    PI: 10.2129
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000268317genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-31959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien++nrqvtf+kRrng+lKKA+ELS+LCdae+a+i+fss+g+lyeys+
  MDP0000268317  9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEIALIVFSSRGRLYEYSN 59
                   79***********************************************95 PP
2K-box67.93.4e-2380139665
          K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkki 65 
                    ++s +e +a+++qqe+akL+++i++Lq+ +Rhl+G+ L++L++keL+qLe++Le+++++i
  MDP0000268317  80 STSITEINAQYYQQESAKLRQQIQMLQNYNRHLMGDALSNLTVKELKQLENRLERGMTRI 139
                    4458999**************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.824161IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-42160IPR002100Transcription factor, MADS-box
CDDcd002659.45E-43277No hitNo description
SuperFamilySSF554552.22E-32275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-33323IPR002100Transcription factor, MADS-box
PfamPF003198.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-1687139IPR002487Transcription factor, K-box
PROSITE profilePS5129710.76188140IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCD AEIALIVFSS RGRLYEYSNN  60
NSIRNTIERY KKACSDSTGS TSITEINAQY YQQESAKLRQ QIQMLQNYNR HLMGDALSNL  120
TVKELKQLEN RLERGMTRIX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-21161161Myocyte-specific enhancer factor 2B
1tqe_Q4e-21161161Myocyte-specific enhancer factor 2B
1tqe_R4e-21161161Myocyte-specific enhancer factor 2B
1tqe_S4e-21161161Myocyte-specific enhancer factor 2B
6c9l_A4e-21161161Myocyte-specific enhancer factor 2B
6c9l_B4e-21161161Myocyte-specific enhancer factor 2B
6c9l_C4e-21161161Myocyte-specific enhancer factor 2B
6c9l_D4e-21161161Myocyte-specific enhancer factor 2B
6c9l_E4e-21161161Myocyte-specific enhancer factor 2B
6c9l_F4e-21161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.168170.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3702110.0AB370211.1 Malus x domestica MADS mRNA for MADS-box transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950484.11e-96agamous-like MADS-box protein AGL11 isoform X1
RefseqXP_028950485.11e-96agamous-like MADS-box protein AGL11 isoform X1
SwissprotA0A217EJJ02e-83AG11S_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A498HXV53e-95A0A498HXV5_MALDO; Uncharacterized protein
STRINGXP_009362389.12e-92(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.14e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  2. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  3. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  4. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]