PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000269098
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 128aa    MW: 14968 Da    PI: 9.9387
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000269098genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.3e-1581125147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+ E+ ++++a k++G   W +I +++g ++t  q++s+ qk+
    MDP0000269098  81 RERWTEGEHNKFLEALKLYGRA-WQRIEEHIG-TKTVVQIRSHAQKF 125
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.94E-1575127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-875125IPR009057Homeodomain-like
PROSITE profilePS5129418.28276128IPR017930Myb domain
TIGRFAMsTIGR015575.1E-1779128IPR006447Myb domain, plants
SMARTSM007172.8E-1180128IPR001005SANT/Myb domain
PfamPF002491.8E-1281124IPR001005SANT/Myb domain
CDDcd001672.26E-883126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MAGIDDSTGQ TLCLYIPSLW RLCYHLPFSH HSDRTTVAGN YAFSGKFLVS NWSSPRHCPF  60
VEKSLNPPWF AHKPYTTTKQ RERWTEGEHN KFLEALKLYG RAWQRIEEHI GTKTVVQIRS  120
HAQKFFSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.43e-31MYB_related family protein