PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000269921
Common NameAP1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 24269.5 Da    PI: 9.3416
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000269921genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtfskR +g+lKKA+E+SvLCda+va+i+fs++gkl ey++
  MDP0000269921  9 KRIENKINRQVTFSKRSTGLLKKAHEISVLCDAQVALIVFSNKGKLLEYAT 59
                   79***********************************************86 PP
2K-box95.21e-31811747100
          K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                    ++ + + + +++ e+++Lk+++e Lqr++Rh+lGedL+sL+lk +q+LeqqL+++ k+iR +Kn+l++e+i elq+kek++qe+n+ L kk++e
  MDP0000269921  81 VEPDFESQGNWTFEYSRLKAKVEVLQRNHRHYLGEDLDSLTLKXIQSLEQQLDTAHKQIRLRKNQLMHESITELQRKEKAIQEQNNLLAKKIKE 174
                    5555566789*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.048161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-33291IPR002100Transcription factor, MADS-box
CDDcd002658.85E-40279No hitNo description
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-2787172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.64388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRSTGLLK KAHEISVLCD AQVALIVFSN KGKLLEYATD  60
SCMEQILERY ERYSYAERQL VEPDFESQGN WTFEYSRLKA KVEVLQRNHR HYLGEDLDSL  120
TLKXIQSLEQ QLDTAHKQIR LRKNQLMHES ITELQRKEKA IQEQNNLLAK KIKEKEKAAA  180
QPQVQNWEQQ NHDLDLLPQP LPCLNIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-21174173MEF2 CHIMERA
6byy_B9e-21174173MEF2 CHIMERA
6byy_C9e-21174173MEF2 CHIMERA
6byy_D9e-21174173MEF2 CHIMERA
6bz1_A9e-21174173MEF2 CHIMERA
6bz1_B9e-21174173MEF2 CHIMERA
6bz1_C9e-21174173MEF2 CHIMERA
6bz1_D9e-21174173MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29480.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4585030.0AB458503.1 Malus x domestica MdAP1a mRNA for APETALA1 like protein, complete cds, cultivar: Fuji.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280866.11e-150truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-115AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLB3GCI51e-149B3GCI5_MALDO; APETALA1
TrEMBLQ6YNE51e-149Q6YNE5_MALDO; AP1-like protein
STRINGXP_008389388.11e-149(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.18e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]