PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000269939
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 172aa    MW: 19500.1 Da    PI: 6.9464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000269939genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-06132154123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C++C++ F r+ nL+ H  +H
  MDP0000269939 132 YVCEICNQGFQRSQNLQMHXYRH 154
                    9******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-5129155No hitNo description
PROSITE profilePS5015710.263132159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5132151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRQQKRDEEG LHLLTLIFQC AEAVSADNYD EATKMLLEIS EFSTQIRPHT HYRNNQNHVA  60
ETALFLSAQN LNPSRRCTNN NTAASSSAPP XSSSHENGGA THKRKRRPAG TPDQDAEVVS  120
LSPKTLLESD LYVCEICNQG FQRSQNLQMH XYRHKVPSET QKKDETLLQE AW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.127702e-95bud| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.16e-31C2H2-like zinc finger protein