PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000270062
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 390aa    MW: 45398.4 Da    PI: 10.4024
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000270062genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.9e-29110160151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    krien   rqvtfskRrng+lKKA+ELSvLCdaeva++ifs +gklye+ss
  MDP0000270062 110 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSARGKLYEFSS 160
                    79***********************************************96 PP
2K-box62.81.3e-21184258983
          K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                    + ++++e+ +++ + L k+ie+++ ++R+llG+dLes+s++eL+q e+qLe+slkkiR+kK++ll+eqi++l++ 
  MDP0000270062 184 AFQEDMEHETNDTQTLAKKIESIEASKRKLLGNDLESCSMEELHQTENQLERSLKKIRAKKHQLLREQIDKLKEE 258
                    567789999**************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.399102162IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-39102161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500104158IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-30104175IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-30104124IPR002100Transcription factor, MADS-box
CDDcd002651.17E-39104171No hitNo description
PfamPF003192.0E-25111158IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-30124139IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-30139160IPR002100Transcription factor, MADS-box
PfamPF014862.0E-19188258IPR002487Transcription factor, K-box
PROSITE profilePS5129712.366189295IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010048Biological Processvernalization response
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGKNLTHHTP LKQKPRDRPR DVDNRRRVAT PYWTITLSNR TEKFHASAPH RNVHCFRFKA  60
RHSRAGQYRQ QLVVGHFFHI FXEIGFWGFP XFDFRVRKGE KMVRGKTQMK RIENAASRQV  120
TFSKRRNGLL KKAFELSVLC DAEVALVIFS ARGKLYEFSS TSIRSTIDRY QMRVKDQGQL  180
TTKAFQEDME HETNDTQTLA KKIESIEASK RKLLGNDLES CSMEELHQTE NQLERSLKKI  240
RAKKHQLLRE QIDKLKEECG MQQLGPSRKS KHGDDRESRS GWDPIPFKYV KLRNEIANLA  300
QVLEKEFHSA YSYCKQIRSS GYPTCRSTLS RVSTCISRSI FLFGLYQLPS MECPDFTYRF  360
SAAAISWSLL VVPAQSEQAK EVVDTIQLDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17102170169MEF2C
5f28_B5e-17102170169MEF2C
5f28_C5e-17102170169MEF2C
5f28_D5e-17102170169MEF2C
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162570.0bud| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3702120.0AB370212.1 Malus x domestica MADS16 mRNA for MADS-box transcription factor, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-66AGAMOUS-like 19