PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000270336
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 651aa    MW: 74519.8 Da    PI: 5.1558
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000270336genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08528582147
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT eE + l+++v+++G+     +Wk I ++       +R + ++k++w+ y
    MDP0000270336 528 RLDWTDEELKMLKEGVRLHGTLngkmQWKEILEYGHnvfhVTRQPVDLKDKWRRY 582
                      789*****************99************99*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.06E-61371IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.7E-51669IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS0135901865IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500905.924349420IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-4352425IPR009057Homeodomain-like
SMARTSM007178.5353422IPR001005SANT/Myb domain
CDDcd116602.34E-7356417No hitNo description
PROSITE profilePS5129410.111523587IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-8525590IPR009057Homeodomain-like
SuperFamilySSF466892.94E-9526586IPR009057Homeodomain-like
SMARTSM007170.0021527585IPR001005SANT/Myb domain
PfamPF002494.2E-7529582IPR001005SANT/Myb domain
CDDcd116603.29E-9531580No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MGVEESMELD GLLEVENCVR CNDGGSGSRK LMVCSEKGCP IALHEECMCA RPVFDQLGKF  60
YCPYCAYKRE FFRCRELGRK VMGSKSVLSK FIDAGEGEXC GCETGGWGXV EVRGQXVGVE  120
GGGAVEGGTD QRREIEDVRG EERIDEDPEE EEIVEETQEE DAEPRETMNN DNARDGLDRR  180
DEEDCLRVSE EXKGGSDEEE QEEETEPQSG CCVQEMTNNH NAHGLSDQRD EEDGKRVPEE  240
NEGESEDEEQ MQSVEKEVPG NSTVVPESDE LDTGSPLVRK QRFKQKSKRI KQPQSVASLR  300
TVPSXSRELS ARRTRSAEEH AKNQNGKAKT FSKKERENQE SARNLVLPNV KGKRSKWTDE  360
EIKMLKLESN LSNLXLQEGV RVCGSSNGKM QWKKILEYGH KVFHRTREPV DLKDKWRRSL  420
GKENKDNAHD GFDQRDEKDG XRLSEENEGK SEDEEQMRSV EKEVPGKSNV DSKSENLDTG  480
SPLVRSKQLK QKAKTKEQPP NAKTFSKRER EIQESSRNLV LPNGKRKRLD WTDEELKMLK  540
EGVRLHGTLN GKMQWKEILE YGHNVFHVTR QPVDLKDKWR RYFREKARKS KDTVASLSLL  600
TTCSSYIYXQ IGKLAXRLST EVMAMLVKNV LHVCIRMVDE WDGIDQFVRQ W
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.227830.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357976.20.0DNA ligase 1-like
TrEMBLA0A498J3K80.0A0A498J3K8_MALDO; Uncharacterized protein
STRINGXP_008357975.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022