PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000271420

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 357aa MW: 39837.8 Da PI: 6.9039

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000271420	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	164	210	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L MDP0000271420 164 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 210 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-12	164	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-14	165	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-14	165	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-13	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.23E-5	174	213	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MMCGKKEDQG ECSQSVQNLQ AFQEHLFLQQ QQHHQMQQQQ HHQMQQQQGL IFPHDHQPPP 60 PILQPWTLPP NHTFNPTAHD PFLLPTPPPI PSSSSYASFF NRRAPSLQFT YDGSTSDHHH 120 HLRILSETLG PMVQPGSAPF GLQAELGKLT AQEIMDAKAL AASKSHSEAE RRRRERINNH 180 LAKLRSLLPS TTKTDKASLL AEVIQHVKEL KRQTSLIAET SPVPTETDEL IVDDESDEDG 240 KFVIKASLCC EDRSDLLPDL IKTLKALRLR TLKAEITTLG GRVKNVLFIT GEEDSSNSGG 300 EQIQMPHQQY CKSSIQEALK AVMEKTAGGG GDQDQSSSGS AKRQRTNNIN ILEHRSL

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MMCGKKEDQG ECSQSVQNLQ AFQEHLFLQQ QQHHQMQQQQ HHQMQQQQGL IFPHDHQPPP  60
PILQPWTLPP NHTFNPTAHD PFLLPTPPPI PSSSSYASFF NRRAPSLQFT YDGSTSDHHH  120
HLRILSETLG PMVQPGSAPF GLQAELGKLT AQEIMDAKAL AASKSHSEAE RRRRERINNH  180
LAKLRSLLPS TTKTDKASLL AEVIQHVKEL KRQTSLIAET SPVPTETDEL IVDDESDEDG  240
KFVIKASLCC EDRSDLLPDL IKTLKALRLR TLKAEITTLG GRVKNVLFIT GEEDSSNSGG  300
EQIQMPHQQY CKSSIQEALK AVMEKTAGGG GDQDQSSSGS AKRQRTNNIN ILEHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	174	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP689407	0.0	KP689407.1 Prunus pseudocerasus isolate Unigene10252 bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008389318.2	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-112	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A498I8U9	0.0	A0A498I8U9_MALDO; Uncharacterized protein
STRING	XP_008389318.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	7e-88	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000271420

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]