PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000271513
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 216aa    MW: 25090.1 Da    PI: 10.1431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000271513genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-062446123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++Cg+ F ++  L  H+++H
  MDP0000271513 24 FECHYCGRKFESSQALGXHQNKH 46
                   89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-42150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.49E-72152No hitNo description
PROSITE profilePS5015712.5492451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
PfamPF120233.8E-16173215IPR021899Protein of unknown function DUF3511
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKLFGFSVTD DSDQVAVIIE SKKFECHYCG RKFESSQALG XHQNKHKRER QLERMAMLEH  60
IQHLRHPPPN HNHRDQNQLV AASVPIFVCS TGSTSNINGD HAGAARVPSV VAPRNLHGPY  120
FNQIEQARKM REMDEKQSPY RSSYMLDGDH DHEGYLWKNQ RYSRKASSIY NSSQSELKRQ  180
RRVAKYKSYV VEAKFKTALK NGVRWFKNKY DALVYA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008353214.21e-90zinc finger protein 8-like
TrEMBLA0A498HLW88e-65A0A498HLW8_MALDO; Uncharacterized protein
STRINGXP_008390584.13e-90(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.13e-13C2H2 family protein