PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000271624
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 409aa    MW: 44892.8 Da    PI: 11.183
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000271624genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.18.2e-38263322261
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                    +++   cprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k++
  MDP0000271624 263 NQQPHGCPRCQSMNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKMKRA 322
                    578889**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474734.56E-10355IPR011992EF-hand domain pair
Gene3DG3DSA:1.10.238.102.3E-13455IPR011992EF-hand domain pair
PROSITE profilePS5022210.971843IPR002048EF-hand domain
SMARTSM000540.00211240IPR002048EF-hand domain
CDDcd000516.64E-71455No hitNo description
PROSITE patternPS0001802133IPR018247EF-Hand 1, calcium-binding site
ProDomPD0074784.0E-23264316IPR003851Zinc finger, Dof-type
PfamPF027014.3E-33265321IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.453267321IPR003851Zinc finger, Dof-type
PROSITE patternPS013610269305IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGKDLSDDQV SSMKEACTLF DTDNDGKIAP SELGILMRSL GGNPTQAQLK SIVAEEKLTA  60
PLRLPSLPRP HGQAHEARAL RSPAPRRLQG PRQGLNRLRV RVGAPAHPHQ HRREIGAVRV  120
RRVDPGGGCR VRWQDQIRGL HCQNGGQVRD VTATLASARP GGHGAQIVEQ IPXISVRMVP  180
ESSTAKARKP IMELDRLERV QSVQSRVGRR RFRFRAEPGR DFTSIVGFEA SKLANLLHLL  240
PGRLPGRGQQ NQDQRLKAAE QQNQQPHGCP RCQSMNTKFC YYNNYSLSQP RYFCKACRRY  300
WTQGGTLRNV PVGGGCRKMK RAKGGSSSAS ASRTVQPQPS QKEQDMQNTL GIGGDSVGMS  360
TENPSGGLAV HHQYYPGASH GYLSSLAGLQ SLNQSQPFNV GVVMILPRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.156951e-61fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-28TARGET OF MONOPTEROS 6