PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000271754

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 602aa MW: 69604.7 Da PI: 8.2897

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000271754	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.3	6.1e-19	37	101	2	67
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 Yn+Y+++vGFs+rk++++k+k+++e+t+r f Cskeg++ ++k++ k +++raetrtgC+ak+k MDP0000271754 37 LYNAYGRKVGFSIRKDRHYKNKKTNEVTSRIFACSKEGFPLQDKRD-YKIKKPRAETRTGCHAKMK 101 7***************************************9999.9***************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-15	37	101	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-21	165	235	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.767	422	460	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-5	434	456	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0012	435	462	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MIDSEEANNI NNDDSNEFDC TPRCGMKFDS QEAAYNLYNA YGRKVGFSIR KDRHYKNKKT 60 NEVTSRIFAC SKEGFPLQDK RDYKIKKPRA ETRTGCHAKM KPECAYMLPS QRKISDSQAA 120 ELDLAEESGI PLRESYELMA KHVGGRESLG YTRVDQKNYL LSRRQRKMVY VFGAALMYDE 180 TAPSFIWLFE TFLVAMSNKA PKTIFTDQDA AMMNAIPHVM PDTYHRLCLW HMMQNALKNV 240 NCVFKGNSGV REVLKXFIDE YEDEDEFLVA WDEMLVKHNV QGKALEWLKG IKKLRKKWAK 300 AYVKMAWSAG MTTTGISESF NGRLKEYLQS DYNVVQFFMH FERVLDDQRY KEYQAEYNLC 360 YKNAQVKVPA MMVKQAGDTY TKAIFEEFQE QYGESLDLRI KSTVDDGEVV VYTVFPPYGA 420 FMERHVRRER DSNIIXCSCR LFEIKGILCS HAIKILREVM DTLEIPSQYI LKRWTKKARA 480 ESIQDMHGKE IQVDPRLQQS SRFRSLCHAF TQISSRAAES DETYEIALSC AHKLGKLTED 540 KLSLQINGKT EDEGEDXAPI MALNHSNDVA NLNNATVVQA KGLKKRETCR GRDDSRVVWK 600 KL

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MIDSEEANNI NNDDSNEFDC TPRCGMKFDS QEAAYNLYNA YGRKVGFSIR KDRHYKNKKT  60
NEVTSRIFAC SKEGFPLQDK RDYKIKKPRA ETRTGCHAKM KPECAYMLPS QRKISDSQAA  120
ELDLAEESGI PLRESYELMA KHVGGRESLG YTRVDQKNYL LSRRQRKMVY VFGAALMYDE  180
TAPSFIWLFE TFLVAMSNKA PKTIFTDQDA AMMNAIPHVM PDTYHRLCLW HMMQNALKNV  240
NCVFKGNSGV REVLKXFIDE YEDEDEFLVA WDEMLVKHNV QGKALEWLKG IKKLRKKWAK  300
AYVKMAWSAG MTTTGISESF NGRLKEYLQS DYNVVQFFMH FERVLDDQRY KEYQAEYNLC  360
YKNAQVKVPA MMVKQAGDTY TKAIFEEFQE QYGESLDLRI KSTVDDGEVV VYTVFPPYGA  420
FMERHVRRER DSNIIXCSCR LFEIKGILCS HAIKILREVM DTLEIPSQYI LKRWTKKARA  480
ESIQDMHGKE IQVDPRLQQS SRFRSLCHAF TQISSRAAES DETYEIALSC AHKLGKLTED  540
KLSLQINGKT EDEGEDXAPI MALNHSNDVA NLNNATVVQA KGLKKRETCR GRDDSRVVWK  600
KL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468393.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_028080652.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008351321.1	0.0	(Malus domestica)
STRING	XP_008354517.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-57	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000271754