PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000272164
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 303aa    MW: 34843.9 Da    PI: 5.0045
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000272164genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.41.2e-2271441128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.........kvka..eekewyfFskrdkkyatgkrknra..tksgy 82 
                    +p+G+rF P+d+el+  yL++k++g++ +   +++++d+y + eP+d+ +         +     ++k++y F++ ++k+++g+r  r+  t+ g+
  MDP0000272164   7 VPVGYRFMPRDDELLLGYLRPKLDGQDYPK-GIVHDCDLYGLeEPSDIWRrlncashdgQ--DctDDKDIYVFTTLNSKAPNGSRVCRTvgTTGGT 99 
                    599************************999.89*******9978****643666655442..14477899******************645779** PP

            NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    Wk     ke++++  ++++g +k +++ ++ +  +++ +W+m e++l
  MDP0000272164 100 WKGEDAGKEIYASgIKQAIGFRKRFTYRNKGS--PQNDHWIMLEFHL 144
                    ************855677*********95444..459********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-293167IPR003441NAC domain
PROSITE profilePS5100528.5997167IPR003441NAC domain
PfamPF023659.0E-158144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAGYYQVPVG YRFMPRDDEL LLGYLRPKLD GQDYPKGIVH DCDLYGLEEP SDIWRRLNCA  60
SHDGQDCTDD KDIYVFTTLN SKAPNGSRVC RTVGTTGGTW KGEDAGKEIY ASGIKQAIGF  120
RKRFTYRNKG SPQNDHWIML EFHLDPSLLR NKHHQEKNIV LCILRRKDDI SKKXKLEERD  180
NYEENAANHF QPQXLNDINV GDYNNAPSYM EQIAFDHLQP QALTATTTGD YINDPRYTEE  240
NAANHFQPQE HYAATTGDYS NADWYTEQNA ADHFEPHDEA HNATNEDLTT ALRRMEEILM  300
SGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-14717317171NO APICAL MERISTEM PROTEIN
1ut4_B1e-14717317171NO APICAL MERISTEM PROTEIN
1ut7_A1e-14717317171NO APICAL MERISTEM PROTEIN
1ut7_B1e-14717317171NO APICAL MERISTEM PROTEIN
3swm_A1e-14717320174NAC domain-containing protein 19
3swm_B1e-14717320174NAC domain-containing protein 19
3swm_C1e-14717320174NAC domain-containing protein 19
3swm_D1e-14717320174NAC domain-containing protein 19
3swp_A1e-14717320174NAC domain-containing protein 19
3swp_B1e-14717320174NAC domain-containing protein 19
3swp_C1e-14717320174NAC domain-containing protein 19
3swp_D1e-14717320174NAC domain-containing protein 19
4dul_A1e-14717317171NAC domain-containing protein 19
4dul_B1e-14717317171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347110.20.0NAC domain-containing protein 41-like
TrEMBLA0A498KBK10.0A0A498KBK1_MALDO; Uncharacterized protein
STRINGXP_008361192.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.13e-16NAC domain containing protein 12