PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000272600

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 68aa MW: 7562.86 Da PI: 8.5047

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000272600	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	24.5	7.3e-08	3	27	2	23
DUF260 2 CaaCkvlrrkCakdCvlapyf...p 23 C++C+vlr++C++ C+l+ ++ MDP0000272600 3 CNGCRVLRKGCSDTCILRSCLywiD 27 *******************995543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.5E-4	3	27	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MGCNGCRVLR KGCSDTCILR SCLYWIDSTE AQGSILAACF FSVGLSLRWR ISMSTRLSDI 60 NPKVRPDC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23857	1e-41	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354105.1	1e-14	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SZE8	3e-13	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A498JAZ2	3e-37	A0A498JAZ2_MALDO; Uncharacterized protein
STRING	XP_009354105.1	4e-14	(Pyrus x bretschneideri)
STRING	XP_008363136.1	7e-15	(Malus domestica)
STRING	XP_008373879.1	7e-15	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-15	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	MDP0000272600