PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000272716
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 670aa    MW: 74294.8 Da    PI: 9.3952
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000272716genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.45.7e-55511551102
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflv
  MDP0000272716  51 QLQMFWTYQrheIESVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLV 146
                    89*****999999*********************************************************************************** PP

          NF-YC  94 divprdelk 102
                    divprde+k
  MDP0000272716 147 DIVPRDEIK 155
                    ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.02E-3247145IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-3665137IPR009072Histone-fold
PfamPF008084.2E-2073136IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
TIGRFAMsTIGR016272.2E-73456662IPR006514IRX15/IRX15L/IGXM
PfamPF046698.0E-57468650IPR021148Polysaccharide biosynthesis domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045492Biological Processxylan biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MEPNPNSGAP TSAAAAPTQQ PPQAQSSPYP ATQSSVPALP FHHLLQQQQQ QLQMFWTYQR  60
HEIESVNDFK NHQLPLARIK KIMKADEDVR MISAEAPVLF AKACELFILE LTIRSWLHAE  120
ENKRRTLQKN DIAAAITRTD IFDFLVDIVP RDEIKEEAVG LGGMVGATAS GVPYYYPPMG  180
QPAGGPGGMM IGRPAVDASG VYGVQPPSQA WQSVWQTAAD DGSYGSGGSS GQGNLDGQRV  240
ALMFSVSRIN LNDGYLPXQK LKSSQFALYR LIDSSSERTT FCIFFVLTLL TCYGLYITKL  300
RDHALKSLGF NLPGFPILRR EFSSLGASVK LQPSNTPPPD ISLQGVIAAA EEVKEKRDRK  360
MPPEVPHFRS IVTPLVRFSS PVSPEAQECQ PHRHKQSRGS KAMNFSRTKL IPFLVLILSI  420
VSVLRLVRIA VTTPPPTLGK TCSFSSTCTK FRAETNASAN TSGLRKKEYQ LLLNLISQKA  480
PCNLLIFGLE PQYISLSXIN AGGITVFLED DQKKISTLKP NSNTTRVYKV DYQIPAKEAY  540
RLLKHAREHP DCVPSSKLLQ RSKCQLALKN LPQEVYQLKW DVVVVDGPSG NAPEEPGRMS  600
AIYSASMIAR NANITHVVVH DVDRMIEKWF SWEFLCDENL VSSKGRLWNF RITGQSNSTN  660
FCPAKAIRIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-5059151395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.25770.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-108AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-81nuclear factor Y, subunit C4