PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000273211

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bZIP

Protein Properties

Length: 535aa MW: 60081.9 Da PI: 9.9647

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000273211	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.1	1e-14	247	292	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+k+ e MDP0000273211 247 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKQKE 292 79****************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-14	236	293	No hit	No description
SMART	SM00338	1.2E-10	243	300	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.794	245	293	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.70E-24	247	301	No hit	No description
Pfam	PF00170	2.7E-12	247	293	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.38E-10	247	292	No hit	No description
PROSITE pattern	PS00036	0	250	265	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MGSQGGADGN CKQSQFQPLA RQNSIYSLTL DEVQNQLGDL GKPLSSMNLD ELLKNVWSAE 60 ANQIMGIDIE GNTLVNQAQL QRQASLSLTS ALSKKTVDEV WKDIQQSKDE EEKKSQERQR 120 TLGEMTLEDF LVKAGVVAEA EASSDKKYAD PLVGVDGNVA VQLPQGQWMQ YPQPQYQHPQ 180 QSMMGVYMPS QPLXPPMHVG AGAMMEXPYP DNQVAVPSPL MGTLSDTQTP GRKRGNPEDI 240 VEKTVERRQK RMIKNRESAA RSRARKQAYT NELENKVSRL EEENERLRKQ KEQEKVLPSA 300 PPPEPKISPR PFLAMFFAGV RVWVLVLVST EXIGLITFLS WVILALPHXG RHRLLLHGVS 360 EIASERLPIW PQRVGPTAVK RKQQALKNLI KTPSRNAITA AASPSNITGS YPSLSHTGRA 420 RVSLTLPLLI NFQRFLDIHN ELNWSCFPCH NSSFRVSHRF HKIISNSNFA TGKEGALCIN 480 QALILRWPXT LILKPNPXNQ RPQQRSNLEE HALLFQPXVH MLNTTRQHRP SDALV

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MGSQGGADGN CKQSQFQPLA RQNSIYSLTL DEVQNQLGDL GKPLSSMNLD ELLKNVWSAE  60
ANQIMGIDIE GNTLVNQAQL QRQASLSLTS ALSKKTVDEV WKDIQQSKDE EEKKSQERQR  120
TLGEMTLEDF LVKAGVVAEA EASSDKKYAD PLVGVDGNVA VQLPQGQWMQ YPQPQYQHPQ  180
QSMMGVYMPS QPLXPPMHVG AGAMMEXPYP DNQVAVPSPL MGTLSDTQTP GRKRGNPEDI  240
VEKTVERRQK RMIKNRESAA RSRARKQAYT NELENKVSRL EEENERLRKQ KEQEKVLPSA  300
PPPEPKISPR PFLAMFFAGV RVWVLVLVST EXIGLITFLS WVILALPHXG RHRLLLHGVS  360
EIASERLPIW PQRVGPTAVK RKQQALKNLI KTPSRNAITA AASPSNITGS YPSLSHTGRA  420
RVSLTLPLLI NFQRFLDIHN ELNWSCFPCH NSSFRVSHRF HKIISNSNFA TGKEGALCIN  480
QALILRWPXT LILKPNPXNQ RPQQRSNLEE HALLFQPXVH MLNTTRQHRP SDALV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13554	0.0	bud\| fruit\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY786307	0.0	AY786307.1 Malus x domestica bZIP transcription factor (ZIP1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001281045.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	5e-87	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	Q32WR6	0.0	Q32WR6_MALDO; BZIP transcription factor
STRING	XP_008346168.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	7e-65	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	MDP0000273211

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]